CK936512

Overview
NameCK936512
Unique NameCK936512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_HELP2 (Urease accessory protein ureG OS=Helicobacter pylori (strain P12) GN=ureG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.755e-49
Identity = 83/139 (59.71%), Postives = 109/139 (78.42%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P ERI  VETGGCPH AIRED S+NL  +EE+ + F   +LLL ESGGDNL+A F+ ELAD+ I++I+V+ GDKIPRKGGPGIT++DLL
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETGGCPHTAIREDASMNLEAVEEMHDRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLL 142          

HSP 2 Score: 39.6614 bits (91), Expect = 9.755e-49
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADL VMERD+ +MR   PFIF  ++   G+++++
Sbjct:  153 VGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVI 188          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURCH (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain HI2424) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.270e-48
Identity = 94/154 (61.04%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    5 APSSIRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158          

HSP 2 Score: 28.1054 bits (61), Expect = 1.270e-48
Identity = 13/39 (33.33%), Postives = 22/39 (56.41%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:  169 VGANLDVMASDTRKMRGERPYVMTNLKALDGVADVIAFI 207          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURCA (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain AU 1054) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.270e-48
Identity = 94/154 (61.04%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    5 APSSIRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158          

HSP 2 Score: 28.1054 bits (61), Expect = 1.270e-48
Identity = 13/39 (33.33%), Postives = 22/39 (56.41%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:  169 VGANLDVMASDTRKMRGERPYVMTNLKALDGVADVIAFI 207          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_PROMH (Urease accessory protein ureG OS=Proteus mirabilis (strain HI4320) GN=ureG PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 1.271e-48
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+GGPVG+GKTAL+  LCK +RD Y +A VTNDI+T+ED + L R  AL  +RI  VETGGCPH AIRED S+NL  +EEL+   K  D++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT +DLL
Sbjct:   10 IGVGGPVGSGKTALLEVLCKAMRDSYQIAVVTNDIYTQEDAKILTRAQALDADRIIGVETGGCPHTAIREDASMNLAAVEELAMRHKNLDIVFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITHSDLL 148          

HSP 2 Score: 38.5058 bits (88), Expect = 1.271e-48
Identity = 16/40 (40.00%), Postives = 26/40 (65.00%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 716
            +GA L VME D  +MR   P++F  +K  +G+E I++ I+
Sbjct:  159 VGASLEVMEADTAKMRPVKPYVFTNLKEKVGLETIIDFII 198          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_HELHP (Urease accessory protein ureG OS=Helicobacter hepaticus GN=ureG PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.271e-48
Identity = 83/139 (59.71%), Postives = 109/139 (78.42%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +GI GPVG+GKTAL+ +L + + ++YSLA +TNDI+T+ED EF+ +N  LP ERI  VETGGCPH AIRED S+NL  +EE+   F   ++L  ESGGDNL+A FS ELAD+ I++I+V+ GDKIPRKGGPGI ++DLL
Sbjct:    4 IGICGPVGSGKTALIESLTRKMNEQYSLAVITNDIYTQEDAEFMSKNSVLPSERIIGVETGGCPHTAIREDASMNLEAVEEMQERFPDIEILFIESGGDNLSATFSPELADFTIFVIDVAQGDKIPRKGGPGIMRSDLL 142          

HSP 2 Score: 40.817 bits (94), Expect = 1.271e-48
Identity = 16/39 (41.03%), Postives = 28/39 (71.79%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L++MERDA +MR+  PF+F  ++   G++ +V  I
Sbjct:  153 VGANLSIMERDAKKMREDKPFLFTNIRAKEGIDAVVEWI 191          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_HELPY (Urease accessory protein ureG OS=Helicobacter pylori GN=ureG PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.272e-48
Identity = 83/139 (59.71%), Postives = 108/139 (77.70%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P ERI  VETGGCPH AIRED S+NL  +EE+   F   +LLL ESGGDNL+A F+ ELAD+ I++I+V+ GDKIPRKGGPGIT++DLL
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLL 142          

HSP 2 Score: 39.6614 bits (91), Expect = 1.272e-48
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADL VMERD+ +MR   PFIF  ++   G+++++
Sbjct:  153 VGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVI 188          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_HELPH (Urease accessory protein ureG OS=Helicobacter pylori (strain HPAG1) GN=ureG PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.272e-48
Identity = 83/139 (59.71%), Postives = 108/139 (77.70%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P ERI  VETGGCPH AIRED S+NL  +EE+   F   +LLL ESGGDNL+A F+ ELAD+ I++I+V+ GDKIPRKGGPGIT++DLL
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLL 142          

HSP 2 Score: 39.6614 bits (91), Expect = 1.272e-48
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADL VMERD+ +MR   PFIF  ++   G+++++
Sbjct:  153 VGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVI 188          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_HELPG (Urease accessory protein ureG OS=Helicobacter pylori (strain G27) GN=ureG PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.272e-48
Identity = 83/139 (59.71%), Postives = 108/139 (77.70%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+ GPVG+GKTAL+ AL + +   Y +A +TNDI+TKED EF+ +N  +P ERI  VETGGCPH AIRED S+NL  +EE+   F   +LLL ESGGDNL+A F+ ELAD+ I++I+V+ GDKIPRKGGPGIT++DLL
Sbjct:    4 IGVCGPVGSGKTALIEALTRHMSKDYDMAVITNDIYTKEDAEFMCKNSVMPRERIIGVETGGCPHTAIREDASMNLEAVEEMHGRFPNLELLLIESGGDNLSATFNPELADFTIFVIDVAEGDKIPRKGGPGITRSDLL 142          

HSP 2 Score: 39.6614 bits (91), Expect = 1.272e-48
Identity = 16/36 (44.44%), Postives = 26/36 (72.22%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIV 704
            +GADL VMERD+ +MR   PFIF  ++   G+++++
Sbjct:  153 VGADLKVMERDSKKMRGEKPFIFTNIRAKEGLDDVI 188          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_BURCC (Urease accessory protein ureG OS=Burkholderia cenocepacia (strain MC0-3) GN=ureG PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 1.655e-48
Identity = 94/154 (61.04%), Postives = 113/154 (73.38%), Query Frame = 1
Query:  136 APPILSRNFNERAFTVGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLF-KADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            AP  + R        VGIGGPVG+GKT L+  LCK +RD+Y L A+TNDI+TKED   L   GALPEERI  VETGGCPH AIRED SINL  ++ +   F  AD++  ESGGDNLAA FS EL+D  IY+I+V+GG+KIPRKGGPGIT++DLL
Sbjct:    5 APSSVRRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRDRYDLVAITNDIYTKEDQRLLTVAGALPEERIMGVETGGCPHTAIREDASINLEAVDRMLARFPDADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLL 158          

HSP 2 Score: 28.1054 bits (61), Expect = 1.655e-48
Identity = 13/39 (33.33%), Postives = 22/39 (56.41%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHI 713
            +GA+L VM  D  +MR   P++   +K   GV +++  I
Sbjct:  169 VGANLDVMASDTRKMRGERPYVMTNLKALDGVADVIAFI 207          
BLAST of CK936512 vs. ExPASy Swiss-Prot
Match: UREG_ECOLX (Urease accessory protein ureG OS=Escherichia coli GN=ureG PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.657e-48
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 1
Query:  181 VGIGGPVGTGKTALMLALCKFLRDKYSLAAVTNDIFTKEDGEFLMRNGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLFK-ADLLLCESGGDNLAANFSRELADYIIYIINVSGGDKIPRKGGPGITQADLL 594
            +G+GGPVG+GKTAL+  LCK +RD Y +A VTNDI+T+ED + L R  AL  +RI  VETGGCPH AIRED S+NL  +EEL+   K  D++  ESGGDNL+A FS ELAD  IY+I+V+ G+KIPRKGGPGIT +DLL
Sbjct:   10 IGVGGPVGSGKTALLEVLCKAMRDTYQIAVVTNDIYTQEDAKILTRAEALDADRIIGVETGGCPHTAIREDASMNLAAVEELAIRHKNLDIVFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITHSDLL 148          

HSP 2 Score: 38.891 bits (89), Expect = 1.657e-48
Identity = 17/40 (42.50%), Postives = 25/40 (62.50%), Query Frame = 3
Query:  597 IGADLAVMERDALRMRDGGPFIFAQVKHGLGVEEIVNHIL 716
            +GA L VME D  RMR   P++F  +K  +G+E I+  I+
Sbjct:  159 VGASLEVMEADTARMRPVKPYVFTNLKKKVGLETIIEFII 198          
The following BLAST results are available for this feature:
BLAST of CK936512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UREG_HELP29.755e-4959.71Urease accessory protein ureG OS=Helicobacter pylo... [more]
UREG_BURCH1.270e-4861.04Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_BURCA1.270e-4861.04Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_PROMH1.271e-4861.87Urease accessory protein ureG OS=Proteus mirabilis... [more]
UREG_HELHP1.271e-4859.71Urease accessory protein ureG OS=Helicobacter hepa... [more]
UREG_HELPY1.272e-4859.71Urease accessory protein ureG OS=Helicobacter pylo... [more]
UREG_HELPH1.272e-4859.71Urease accessory protein ureG OS=Helicobacter pylo... [more]
UREG_HELPG1.272e-4859.71Urease accessory protein ureG OS=Helicobacter pylo... [more]
UREG_BURCC1.655e-4861.04Urease accessory protein ureG OS=Burkholderia ceno... [more]
UREG_ECOLX1.657e-4861.87Urease accessory protein ureG OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_E09 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936512 ID=CK936512; Name=CK936512; organism=Citrus sinensis; type=EST; length=740bp
ACCCATGAAAAAAATCATGGTGATTCAACAGCAACATCATGGGTGGGGTC
AGATGGGAGGGTGTATCATAGCCATGATGGACTGGCGCCACACTCGCACG
AACCCATTTACTCTCCAGGCTATTTCAGCAGAAGAGCTCCGCCTATTCTC
AGCAGAAATTTCAATGAGAGAGCTTTTACCGTTGGCATTGGTGGCCCTGT
TGGTACTGGGAAAACAGCTTTAATGCTGGCTTTGTGTAAATTCTTGCGGG
ACAAGTACAGTCTTGCAGCTGTCACAAATGATATTTTCACAAAAGAAGAT
GGTGAATTCCTGATGCGGAATGGTGCTCTGCCTGAGGAGAGAATACGTGC
TGTGGAAACAGGTGGATGTCCTCATGCTGCAATTCGTGAAGACATCAGCA
TCAATCTGGGCCCTCTCGAGGAACTTTCTAACTTGTTCAAAGCAGACCTA
CTTCTTTGCGAATCTGGGGGAGATAATTTAGCTGCCAACTTCAGCAGGGA
ACTTGCAGACTATATCATTTATATAATAAACGTTTCTGGTGGTGATAAAA
TTCCTCGGAAAGGTGGCCCAGGCATCACCCAAGCTGACCTTCTGCAATAG
GAGCTGACTTAGCAGTAATGGAGCGTGATGCACTCCGGATGCGTGATGGA
GGGCCTTTTATCTTCGCTCAGGTCAAGCATGGGCTTGGTGTGGAGGAAAT
AGTGAATCACATTTTACAGGCTTGGGAAGCANNNNCAGGG
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