CK936508

Overview
NameCK936508
Unique NameCK936508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  135 NAITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 413
            +AI+C  V   L PC+ +  +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A  L S CG  +P   SP+ DC+ V
Sbjct:   24 SAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  138 AITCGQVTASLAPCIPFWRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI-RGIKPNVAAGLPSQCGVRIPY--KISPSTDCS 407
            A++CG+V ++L PC  +   GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG++IPY  +I  +T C+
Sbjct:   26 ALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 39/95 (41.05%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  138 AITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR--GIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 416
            AI+C  V A+L PC+ +   GG  P   CC+G+R L+  A +  D+Q  C C+K   G +    I    AA LP +CGV++PYKI PST+C+ ++
Sbjct:   23 AISCNAVQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.748e-15
Identity = 48/96 (50.00%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  138 AITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 416
            AI+CG VT SL  C  +   GG F P  CCSGV+ LN  ARTT DRQ AC C++   RA G+   +    AA LP  C VRI Y IS  T+C+ VR
Sbjct:   26 AISCGAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGS--RLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.284e-15
Identity = 41/96 (42.71%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  138 AITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNV---AAGLPSQCGVRIPYKISPSTDCSRVR 416
            A++C  V A L PC+ +   GG  P   CC+G+ +L   A+T+ DRQ  C C+K A G +  + P     A  LPS+CGV +PYK SPSTDC  ++
Sbjct:   20 AVSCNTVIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-14
Identity = 40/97 (41.24%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  126 PVTNAITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVR-IPYKISPSTDCSRV 413
            PV  AI+C QV +++ PC  +       P   CC  +R L+   + TPDRQA CNCLK       G+K   AA LP  C V  +   ISP+ DCS+V
Sbjct:   27 PVEGAISCNQVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLK-TQAKSYGVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 34/91 (37.36%), Postives = 49/91 (53.85%), Query Frame = 3
Query:  141 ITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 413
            + CGQV  +L+ C+PF       P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C  +
Sbjct:    1 VNCGQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
BLAST of CK936508 vs. ExPASy Swiss-Prot
Match: NLT21_PARJU (Probable non-specific lipid-transfer protein 2 OS=Parietaria judaica PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 31/98 (31.63%), Postives = 51/98 (52.04%), Query Frame = 3
Query:  126 PVTNAITCGQVTASLAPCIPFWRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPY-KISPSTDCSRVR 416
            P      CG+V   + PC+ F +   + P   CCSG + L+   +TT  ++ AC C+ RA   I GIK  + A +P +C ++     I+   DCS+++
Sbjct:   28 PAPGEEACGKVVQDIMPCLHFVKGEEKEPSKECCSGTKKLSEEVKTTEQKREACKCIVRATKGISGIKNELVAEVPKKCDIKTTLPPITADFDCSKIQ 125          
The following BLAST results are available for this feature:
BLAST of CK936508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP8_ARATH1.025e-1539.78Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP7_ARATH1.025e-1543.62Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTPA_ARATH1.748e-1541.05Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP5_ARATH1.748e-1550.00Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP6_ARATH2.284e-1542.71Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTP_PINTA2.525e-1441.24Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO2.363e-1237.36Non-specific lipid-transfer protein B OS=Ricinus c... [more]
NLT21_PARJU9.928e-1131.63Probable non-specific lipid-transfer protein 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_E04 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936508 ID=CK936508; Name=CK936508; organism=Citrus sinensis; type=EST; length=666bp
GGGGACTCAAGCTTGCATACAGAACCTGATAACTAGCTATAACCAAGCAA
AAGCCTCCCTGAAGAATCCTCATGGCTGCTCTTAAGCTTGTTTGTGCTTT
GCTTTTGTGCATTCTGGTGACTGCCCCGGTGACTAATGCCATAACATGCG
GGCAGGTGACAGCCTCCTTGGCTCCATGCATCCCTTTCTGGAGAACTGGA
GGGCGTTTTCCTCCACCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGG
CGCCGCCAGAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAAC
GAGCTTACGGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTT
CCTAGTCAATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGA
CTGCTCTAGGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGT
ATGATTGACTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCT
TTGTCCGAACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTT
GTATATTTGCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTT
TGAGTGATTAATTATAGTTATTTTGTGGTATTATCGCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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