CK936495

Overview
NameCK936495
Unique NameCK936495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.993e-24
Identity = 65/204 (31.86%), Postives = 110/204 (53.92%), Query Frame = 1
Query:  181 AGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDAYVG-------DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFT---TTAEREIVRD 750
            AG+D P+  FP+ +G    R   + +M   G K    G       +  +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T++MFE ++ PA ++   AVL  +A+GR+TG++LDSG   +  +P+++GY L   I++  LAG  +T    ++  E           A +E VR+
Sbjct:   28 AGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGIVKSPLAGDFITMQCRELFQEMNIELIPPYMIASKEAVRE 231          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACTL8_HUMAN (Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.258e-22
Identity = 63/180 (35.00%), Postives = 96/180 (53.33%), Query Frame = 1
Query:  181 AGDDAPRAVFPSIVGR--------PRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKIL 696
            AG + P+ VFP+IV          P +    V +G    +            T  YPIE G + NW+ ++ +W     N  R   E  PV++TE PL   A+R+KM +I+FE  + P++ +A Q  + LYASG  TG+V+DSG G++   P ++G  LP +   L+ AG+DL+  L+K L
Sbjct:   20 AGWNEPQMVFPNIVNYLPCKENPGPSYARRRVSLGIDICHPD----------TFSYPIERGRILNWEGVQYLWSFVLENHRR-EQEVPPVIITETPLREPADRKKMLEILFELLHVPSVLLADQLQMSLYASGLLTGVVVDSGYGLTRVQPFHQGRPLPASGKTLEFAGQDLSAYLLKSL 188          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ACT1_PSEMZ (Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1
Query:  322 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 456
            YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
Sbjct:    1 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 45          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 45/118 (38.14%), Postives = 75/118 (63.56%), Query Frame = 1
Query:  322 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 675
            +PI+HG+V +WD +E +W       L+V PE+ PVL++++P  P   REK+ +++FE    PA ++A  A+L L + G  +G+ +++G GV H  PIY G++   A  RL++AG  L+
Sbjct:   37 HPIKHGVVVDWDALEGLWERLMVGGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHSWHKATFRLNVAGSTLS 154          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.272e-19
Identity = 55/185 (29.73%), Postives = 97/185 (52.43%), Query Frame = 1
Query:  172 GWVAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSF 717
            GW  G+  P+ VF ++V R R       + +    VG++   + G  ++ + P E  ++SNWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT+++FE +NAP++   I  +   Y + +  ++GIVL+ G+  SH +P+  G  +     R+   G   +  L+K+   +  SF
Sbjct:   39 GW-GGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217          

HSP 2 Score: 21.557 bits (44), Expect = 8.272e-19
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 2
Query:  137 PLVCDNGTGMVKAG 178
            PLV DNG+  ++AG
Sbjct:   26 PLVIDNGSWQLRAG 39          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 1
Query:  154 WNRNG*GWVAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGY 711
            W R G    +G+D P+ V PS  G       + G    + Y+    +S  G + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MFE+   PA Y+A Q     +ASG+ T  ++D G   S    IY+G+ L         +G  + D L + L ++ +
Sbjct:   22 WTRIG---FSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.059e-17
Identity = 50/152 (32.89%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  277 VGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAE 732
            VGD A      + + +P+  GIV++WD ++ IW ++    L    + HP++LTE   N +AN+ K  +I FE+   PA Y+   AV   +A+G+   +VLD G  V+   P+ +G  L     R   AG  L   + K+L  RG   T   E
Sbjct:   72 VGDSANLPLPNMEVLHPLTDGIVADWDAVQNIWEYSLAR-LNADTKTHPLMLTEPCWNTQANKLKALEIAFESLEVPASYLVKDAVASAFAAGKGNALVLDVGSEVASVTPVIDGLVLYKPARRSQYAGDYLDRQIKKVLVSRGIDLTPRFE 222          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.360e-17
Identity = 51/190 (26.84%), Postives = 94/190 (49.47%), Query Frame = 1
Query:  154 WNRNG*GWVAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSF 717
            W R G    AG+++P  + PS      + GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  + PA Y+  QAV   +A+ ++T +++D G   +   P+ +G  +   I +  LAG  L  N+ ++       F
Sbjct:   21 WTRFG---YAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSJ (Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  187 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 678
            D +P  V PS           + +  +D  +GD A  +  +     P+  G V +WD ME + ++  Y+ +     +E  +L TE    PKA RE++ Q+MFE FN    Y + QAVL LYA GR +G  +D G G     P+ EG     A  R D+ G DLT+
Sbjct:   21 DQSPSLVMPS----------KMKLEVEDGQMGDGAVVEEVV----QPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTN 171          
BLAST of CK936495 vs. ExPASy Swiss-Prot
Match: ARP7_ORYSI (Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 56/165 (33.94%), Postives = 81/165 (49.09%), Query Frame = 1
Query:  187 DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLFLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 678
            D +P  V PS           + +  +D  +GD A  +  +     P+  G V +WD ME + ++  Y+ +     +E  +L TE    PKA RE++ Q+MFE FN    Y + QAVL LYA GR +G  +D G G     P+ EG     A  R D+ G DLT+
Sbjct:   21 DQSPSLVMPS----------KMKLEVEDGQMGDGAVVEEVV----QPVVRGFVKDWDAMEDLLNYVLYSNIGWEIGDEGQILFTEPLFTPKALREQLAQLMFEKFNVSGFYDSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVCEGAVQHIASKRFDIGGTDLTN 171          
The following BLAST results are available for this feature:
BLAST of CK936495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 458
Match NameE-valueIdentityDescription
ACL6A_MOUSE1.993e-2431.86Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACTL8_HUMAN9.258e-2235.00Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2... [more]
ACT1_PSEMZ1.209e-21100.00Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 S... [more]
CT134_MOUSE1.024e-2038.14Putative uncharacterized actin family protein C20o... [more]
ARP5_SCHPO8.272e-1929.73Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP4_SCHPO6.210e-1831.18Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP4_YARLI1.059e-1732.89Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]
ARP42_SCHPO2.360e-1726.84SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]
ARP7_ORYSJ5.257e-1733.94Actin-related protein 7 OS=Oryza sativa subsp. jap... [more]
ARP7_ORYSI5.257e-1733.94Actin-related protein 7 OS=Oryza sativa subsp. ind... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_G10 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936495 ID=CK936495; Name=CK936495; organism=Citrus sinensis; type=EST; length=754bp
GCGGGGAATCAANNNACAACAAAAACCAAACTAAAACAAAACAAAACAAG
GAGGCGTCCATTTTGTGCGCCTCGTAATTCGCTCGTTCTCATCTCATAAC
CGGTAGCAGAAGATGGCAGACGGTGAGGATATTCAGCCACTTGTTTGTGA
TAATGGAACAGGAATGGTTAAGGCTGGGTTGCCGGAGATGATGCTCCACG
GGCGGTGTTCCCCAGTATTGTTGGTCGTCCACGTCACACTGGTGTGATGG
TTGGCATGGGTCAGAAGGATGCGTATGTTGGTGATGAGGCTCAATCGAAG
AGAGGTATTTTGACTTTGAAATACCCCATTGAGCATGGTATTGTGAGCAA
CTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAGCTTC
GTGTTGCCCCTGAAGAGCACCCTGTTCTTCTTACTGAGGCTCCTCTCAAT
CCGAAGGCTAATCGCGAGAAGATGACCCAGATTATGTTTGAGACCTTTAA
TGCTCCCGCTATGTATGTTGCCATCCAGGCCGTTCTTTTCTTGTATGCGA
GTGGTCGTACCACTGGTATTGTGTTGGACTCTGGTGATGGTGTCAGCCAT
ACAGTTCCTATATATGAGGGTTATGCCCTCCCACATGCAATACTTCGTCT
TGACCTTGCTGGTCGTGACCTCACTGATAACTTGATGAAAATCCTCACTG
AGCGTGGGTACTCTTTCACCACCACGGCGGAGCGTGAAATTGTCAGGGAC
ATGA
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