CK936488

Overview
NameCK936488
Unique NameCK936488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10142 contig Csv1_Contig10142:9..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL24_ORYSJ (Germin-like protein 2-4 OS=Oryza sativa subsp. japonica GN=Os02g0532500 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31
Identity = 84/201 (41.79%), Postives = 107/201 (53.23%), Query Frame = 1
Query:  127 DPGHLQDVCV---AINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDY-APYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            DP  +QD CV       P +   +    C+ P    A DF FSG+   GN +   G         Q PGL+TLG+S  R D  A  G  PPH HPRA+E  LVL G +Y GFV S      L AKVL +G+V VFP+ ++HFQ N+G T A  Y A NS+ PG V I  TVFG+   I    L +AF L P  ++ L+ +F
Sbjct:   24 DPDAVQDFCVPDAGRGRPVELAMLPAYPCRSPANLTAGDFAFSGVRAAGNFSPETGFAGVSVTPAQFPGLHTLGMSFARADLSAAGGVNPPHYHPRATETALVLAGRVYAGFVDS---GGRLFAKVLEQGEVMVFPRAMVHFQLNVGDTPATVYGAFNSENPGIVRIPATVFGS--GIREAVLERAFGLTPAELRRLEKRF 219          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: AB19A_PRUPE (Auxin-binding protein ABP19a OS=Prunus persica GN=ABP19A PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31
Identity = 83/190 (43.68%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 708
            +QD CVA     DG    G  CK P      DF +SGLG  GNT N +    T A   Q PG+N LGIS  R+D  P G  P H HP ASE+ LV++GT+  GFV SD   NT   K L KGD+ VFPQGL+HFQ N G T A A+P+ +S  PG + I D     N  +  + + +   LD   +K L+
Sbjct:   20 VQDFCVADYKAPDGPA--GYSCKKPAKVTINDFVYSGLGIAGNTTNIIKAAVTPAFAAQFPGVNGLGISLARLDLGPGGVIPFHTHPGASEVLLVVQGTIIAGFVASD---NTPYLKTLKKGDIMVFPQGLLHFQVNGGGTPALAFPSFSSPSPG-LQILDFALFKN-DLPTELIAQTTFLDAAQIKKLK 202          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL11_ARATH (Germin-like protein subfamily 1 member 1 OS=Arabidopsis thaliana GN=GLP7 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.023e-31
Identity = 74/189 (39.15%), Postives = 110/189 (58.20%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPK-DGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANR-LGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAA-AYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLD 684
            DP  LQD CV+        +F+NGK CKDP  A   DF  S L +PGNT  +   ++ T      +PGLNT+G++  R+D+   G  PPH+HPRASE+ + L+G L VGFV +   +  +  + L+ G+ FVFP+GLIHF +NI   ++A A   L+SQ PG   ++ + F + P    + L  A+ ++
Sbjct:   19 DPDPLQDYCVSPPPSSHQQIFLNGKLCKDPTQASVSDFSTSALSRPGNTKTKPFMINVTVTTTANLPGLNTVGLTMARLDFGGSGVVPPHVHPRASEVTVCLDGVLLVGFVDT---SGRVFTQELHPGETFVFPKGLIHFLYNIDTVSSALAVSGLSSQNPGTQIVSLSSFISKPPFLVEVLKSAYDIN 204          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.989e-30
Identity = 84/190 (44.21%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 708
            +QD CVA  + K      G  C  P   +A DF FSGLG PGNT N +    T A   Q PGLN LG+S  R+D AP G  P H HP ASE+  VL G++  GFV+S    N +  + L  G V VFPQGL+HFQ N GK++A+A    NS  PG + I D    AN       +G  F LD   VK L+
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSS---ANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPG-LQILDFALFANSLPTELVVGTTF-LDATTVKKLK 201          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: ABP20_PRUPE (Auxin-binding protein ABP20 OS=Prunus persica GN=ABP20 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.637e-29
Identity = 73/155 (47.10%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPG 603
            +QD CVA     +G    G  CK P   +  DF FSGLG  GNT+N +    T A V Q PG+N LGIS  R+D A  G  P H HP ASE+ +V +GT+  GFV SD   NT   + L KGD+ VFPQGL+HFQ N G+  A A+ +  S  PG
Sbjct:   25 VQDFCVADLAAPEGPA--GFSCKKPASVKVNDFVFSGLGIAGNTSNIIKAAVTPAFVAQFPGVNGLGISIARLDLAVGGVVPFHTHPGASEVLIVAQGTICAGFVASD---NTPYLQTLEKGDIMVFPQGLLHFQVNGGEAPALAFASFGSASPG 174          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL33_ARATH (Germin-like protein subfamily 3 member 3 OS=Arabidopsis thaliana GN=GER3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.256e-28
Identity = 70/155 (45.16%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPG 603
            +QD CVA  DPK     +G  CK+P      DF F+GLG  GNT+N +    T A      G+N LG+S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K LN+GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   22 VQDFCVA--DPKGPQSPSGYSCKNPDQVTENDFAFTGLGTAGNTSNIIKAAVTPAFAPAYAGINGLGVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLNRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPG 603
            +QD CVA  DPK     +G  CK+P      DF FSGLGK GNT+N +    T A      GLN L +S  R+D A  G  P H HP ASE+ +V++GT+  GF++S    N +  K L++GD  VFPQGL+HFQ N GK  A A+ A  S  PG
Sbjct:   22 VQDFCVA--DPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISS---ANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPG 171          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.798e-28
Identity = 81/190 (42.63%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  139 LQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQ 708
            +QD CVA  + K      G  C  P   +A DF FS LG PGNT N +    T   V Q P LN LGIS  R+D AP G  P H HP ASE+  VL+G++  GF++S    N++  + L  G V VFPQGL+HFQ N GKT AAA    +S  PG + I D    AN +++ + +     L P  VK L+
Sbjct:   19 VQDFCVA--NLKRAETPAGYPCIRPIHVKASDFVFS-LGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISS---ANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPG-LQILDFALFAN-TLSTELVSATTFLPPATVKTLK 200          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 71/169 (42.01%), Postives = 96/169 (56.80%), Query Frame = 1
Query:  127 DPGHLQDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFG 633
            D  ++QD C      +   F+NG  CK+P    A+DF  + L + G+T N L  + T     + PGLNTLG+S  R D    G  P H HPR+SE+  V++G ++ GFV +   NN +   VL KGDVFVFP+GL+HF  + G   A A+   NSQ PG V I + VFG
Sbjct:   19 DSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDT---NNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNIGE-VFG 183          
BLAST of CK936488 vs. ExPASy Swiss-Prot
Match: GL813_ORYSJ (Germin-like protein 8-13 OS=Oryza sativa subsp. japonica GN=Os08g0459700 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.891e-27
Identity = 75/192 (39.06%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  142 QDVCVAINDPKDGVFVNGKFCKDPKLARAEDFFFSGLGKPGNTANRLGVDETDANVEQIPGLNTLGISAFRIDYAPYGQRPPHIHPRASEIFLVLEGTLYVGFVTSDQLNNTLIAKVLNKGDVFVFPQGLIHFQFNIGKTNAAAYPALNSQFPGEVTIADTVFGANPSINPDFLGKAFQLDPKIVKDLQNKF 717
            QD CVA N P      +G  C+      A DF+   L +PG            A V+Q P +N LGISA R+D  P G  P H HP  SE+  VL+G L  GF++S   +N +  K ++KG +FVFPQGL+HFQ+N G T A A+ A +S  PG + I D    AN ++   ++ K   L    V+ L++KF
Sbjct:   29 QDFCVA-NLPLGADTPSGYQCRPAATVTAADFYSGALARPGILIRPFNTSLASAFVQQYPAVNGLGISASRVDILPGGVVPLHTHPAGSELLYVLDGALVAGFISSS--DNKVYYKEVSKGGMFVFPQGLLHFQYNTGDTTAVAFAAYSSSNPG-LQILDYALFAN-NLPTSYVVKGTFLAEAEVRRLKSKF 215          
The following BLAST results are available for this feature:
BLAST of CK936488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GL24_ORYSJ2.070e-3141.79Germin-like protein 2-4 OS=Oryza sativa subsp. jap... [more]
AB19A_PRUPE2.070e-3143.68Auxin-binding protein ABP19a OS=Prunus persica GN=... [more]
GL11_ARATH6.023e-3139.15Germin-like protein subfamily 1 member 1 OS=Arabid... [more]
GL31_ARATH2.989e-3044.21Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
ABP20_PRUPE5.637e-2947.10Auxin-binding protein ABP20 OS=Prunus persica GN=A... [more]
GL33_ARATH1.256e-2845.16Germin-like protein subfamily 3 member 3 OS=Arabid... [more]
GLP1_SINAL1.640e-2845.81Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_BRANA2.798e-2842.63Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]
GL34_ARATH1.389e-2742.01Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL813_ORYSJ6.891e-2739.06Germin-like protein 8-13 OS=Oryza sativa subsp. ja... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004521_G02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936488 ID=CK936488; Name=CK936488; organism=Citrus sinensis; type=EST; length=730bp
GGGGATCACAACACTTGATTAAAGTTTGAGATAGGCACATCCTGTGACTT
AATCACCATGAAGGTAATTCAATTTCTTATAGGTTTTGCCCTCTTGGCTT
TGACTTCTTCTTTGGCCTCTGCCACCGACCCTGGCCATCTTCAAGATGTC
TGTGTAGCCATCAATGACCCCAAGGATGGTGTGTTTGTGAATGGGAAGTT
CTGCAAGGACCCCAAGCTTGCGAGAGCAGAAGATTTCTTCTTCTCAGGGC
TAGGCAAGCCTGGAAACACAGCAAATCGACTTGGTGTTGATGAAACAGAT
GCAAATGTTGAGCAAATTCCAGGACTCAACACCCTTGGCATATCAGCATT
CCGTATTGACTATGCACCATATGGCCAAAGGCCACCTCACATTCACCCCC
GTGCCAGCGAAATCTTCTTAGTCCTGGAAGGAACTCTTTATGTCGGTTTT
GTGACATCAGACCAACTGAATAACACACTCATCGCAAAAGTTCTAAATAA
GGGAGATGTTTTTGTGTTTCCACAAGGTTTGATTCACTTCCAATTCAACA
TTGGAAAAACAAATGCAGCTGCCTATCCTGCTCTAAACAGCCAATTCCCG
GGTGAAGTTACCATAGCCGACACAGTCTTTGGAGCCAATCCTTCAATCAA
TCCCGATTTTCTTGGCAAGGCATTCCAGTTGGACCCAAAGATAGTGAAAG
ATCTTCAAAATAAGTTCATTAATGGCAATT
back to top