CK936483

Overview
NameCK936483
Unique NameCK936483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936483 vs. ExPASy Swiss-Prot
Match: GLPF_THEMA (Probable glycerol uptake facilitator protein OS=Thermotoga maritima GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 62/235 (26.38%), Postives = 96/235 (40.85%), Query Frame = 3
Query:  132 LAEFISTLISVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL--LKFVTNGQTT-------SAFALSSGVGAWNA-VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV----------SWSWDNHWVYWVGPLIGGGLAGIVYEFFF 776
            LAEF+ T++ +  G+G  +  N +        S                      ISG H+NPAVT G    G     +   Y  +Q+LG+ V  +L  L ++ + + T       + F     V  + A ++ EI+ T  L+  V     +     L    P+ +GF+V +  L  G   G ++NPA  FGP L              W   WV  +GP+IGG L   +Y + F
Sbjct:    5 LAEFLGTMLLIILGDG--VVANVVLKKSKGHNSGWIVITTGWGLAVAMSVYLVGRISGAHINPAVTIGLAFIGQFPWSKVPGYIFSQILGAFVGAILVYLTYLPHWKETDDPDAKLAVFCTGPAVRKYGANLLTEIIGTMVLLMGVLGIGANKLADGLN---PLLVGFLVWSIGLSLGGPTGYAINPARDFGPRLAHAILPIPGKRDSDWSYSWVPIIGPIIGGILGASLYNWLF 234          
BLAST of CK936483 vs. ExPASy Swiss-Prot
Match: GLPF_STRPN (Glycerol uptake facilitator protein OS=Streptococcus pneumoniae GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.416e-11
Identity = 62/234 (26.50%), Postives = 100/234 (42.74%), Query Frame = 3
Query:  138 EFISTLISVFAGEG--SGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLL--LKFVTN-------GQTTSAFALSSGV-GAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV----------SWSWDNHWVYWVGPLIGGGLAGIVYEFF 773
            EF+ TLI +  G G  +G+   K   N     S                      +S  ++NPAVT G  + G +     + Y +AQ  G+ +  +L  L+F  +       G   + F+    +    + ++ EI+ TF LV T++A  L   +  +GT A   +  IVG  + +GG   G ++NPA   GP ++             W   W+  VGP+IG  LA +V+  F
Sbjct:    8 EFLGTLILILLGNGVVAGVVLPKTKSNS----SGWIVITMGWGIAVAVAVFVSGKLSPAYLNPAVTIGVALKGGLPWASVLPYILAQFAGAMLGQILVWLQFKPHYEAEENAGNILATFSTGPAIKDTVSNLISEILGTFVLVLTIFALGLYDFQAGIGTFAVGTL--IVGIGLSLGGT-TGYALNPARDLGPRIMHSILPIPNKGDGDWSYAWIPVVGPVIGAALAVLVFSLF 234          
BLAST of CK936483 vs. ExPASy Swiss-Prot
Match: AQP9_RAT (Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.685e-11
Identity = 55/197 (27.92%), Postives = 83/197 (42.13%), Query Frame = 3
Query:  297 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLL--------------KFVTNGQTTSAFALSS----GVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGP----ALVSWSWDNH-------WVYWVGPLIGGGLAGIVYEFFFINQSHEQL 800
            ISGGH+NPAV+F     G +   +   Y  AQ LG+ V    +              K +  G+  +AF  ++     +    A V ++V T  L+  V+A       G    + P+ IG ++       G   G +MNPA    P    AL  W ++         W+  VGP+IG  L G++Y   FI   H +L
Sbjct:   78 ISGGHINPAVSFAMCAFGRMEWFKFPFYVGAQFLGAFVGAATVFGIYYDGLMAFAGGKLLVVGENATAFIFATYPAPFISTPGAFVDQVVSTMFLLLIVFAMFDSRNLGVPRGLEPVVIGLLIIVLSCSLGLNSGCAMNPARDLSPRLFTALAGWGFEVFTVGNNFWWIPVVGPMIGAFLGGLIY-ILFIQMHHSKL 273          
The following BLAST results are available for this feature:
BLAST of CK936483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 193
Match NameE-valueIdentityDescription
GLPF_THEMA7.416e-1126.38Probable glycerol uptake facilitator protein OS=Th... [more]
GLPF_STRPN7.416e-1126.50Glycerol uptake facilitator protein OS=Streptococc... [more]
AQP9_RAT9.685e-1127.92Aquaporin-9 OS=Rattus norvegicus GN=Aqp9 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H05 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936483 ID=CK936483; Name=CK936483; organism=Citrus sinensis; type=EST; length=898bp
GGGGACGTGAACCAGTAGTAATCACACCCCAAAGGTTCAATCTTCATCGT
TTGTTCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCCCCGTGA
GGCGACTCACCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAA
CTCTAATATCTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTCAACAAG
CTCACTCACAACGGCGCCAATACCCCCTCCGGCCTCGTCGCCGCCTCTGT
TGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCAACATTT
CCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGT
AACATCTCCCTTCTACGTGGCATCCTCTACTGGATCGCCCAGCTTCTTGG
ATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCCAGACCA
CATCTGCTTTTGCTCTCTCATCTGGAGTTGGTGCATGGAACGCAGTCGTT
TTCGAGATCGTGATGACATTCGGACTAGTGTACACAGTGTATGCCACAGC
CCTGGACCCAAAGAAGGGAAGCTTGGGGACAATTGCACCAATTGCAATTG
GTTTCATTGTAGGAGCCAACATCTTGGTGGGCGGGGCGTTTGATGGAGCT
TCAATGAACCCAGCAGTGTCATTCGGGCCAGCTTTGGTGAGCTGGAGCTG
GGACAACCACTGGGTCTACTGGGTCGGGCCACTCATCGGTGGTGGGCTAG
CTGGCATCGTCTACGAGTTCTTCTTCATTAACCAGTCGCATGAGCAGCTC
CCAACAACCGAGTACTAAGCTAAAAGCTTGCCATCTATGTGAGTTTGCAC
GGATGTTGTATTTAATTTGCTTTTACCGAGGTTCTTTCTTTTTATTTT
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