CK936480

Overview
NameCK936480
Unique NameCK936480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Developing fruit flavedo at 80 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2171 contig Csv1_Contig2171:79..650. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CROVV (Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC  CHTV +G  HK GPNL+GLFGR++G    YSY+AANK   +IW + TL  YL NPKKYIPGTKMVF GLK  ++R DLIAYLKE+TA
Sbjct:   11 FSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CROAT (Cytochrome c OS=Crotalus atrox PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC  CHTV +G  HK GPNL+GLFGR++G    YSY+AANK   +IW + TL  YL NPKKYIPGTKMVF GLK  ++R DLIAYLKE+TA
Sbjct:   11 FSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_CROAD (Cytochrome c OS=Crotalus adamanteus PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 60/94 (63.83%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC  CHTV +G  HK GPNL+GLFGR++G    YSY+AANK   +IW + TL  YL NPKKYIPGTKMVF GLK  ++R DLIAYLKE+TA
Sbjct:   11 FSMKCGTCHTVEEGGKHKTGPNLHGLFGRKTGQAVGYSYTAANKNKGIIWGDDTLMEYLENPKKYIPGTKMVFTGLKSKKERTDLIAYLKEATA 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_ANAPL (Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++TA
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATA 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC2_XENTR (Cytochrome c, testis-specific OS=Xenopus tropicalis GN=cyct PE=3 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 9.432e-30
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   ++W+E TL  YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGIVWDEGTLLEYLENPKKYIPGTKMIFAGIKKKGERQDLIAYLKQSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_DEBOC (Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29
Identity = 60/93 (64.52%), Postives = 70/93 (75.27%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            FKT+C QCHTV KG  HK GPNL+G+FGR+SG    YSY+ ANK   V W E+T+ +YL NPKKYIPGTKM F GLKKP+DR DLI YL  +T
Sbjct:   17 FKTRCLQCHTVEKGGPHKVGPNLHGIFGRKSGQAAGYSYTDANKKKGVEWTEQTMSDYLENPKKYIPGTKMAFGGLKKPKDRNDLITYLANAT 109          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_COLLI (Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+GLFGR++G    +SY+ ANK   + W E TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++TA
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKAERADLIAYLKQATA 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC1A_XENLA (Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-A PE=3 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.232e-29
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KCAQCHTV K   HK GPNL GLFGR++G  P +SY+ ANK   ++W E TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLK+ST+
Sbjct:   11 FIQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERLDLIAYLKKSTS 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_VARVA (Cytochrome c OS=Varanus varius PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.609e-29
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 286
            F  KC+QCHTV KG  HK GPNL+ LFGR++G    +SY+AANK   + W E TL+ YL NPKKYIPGTKM+F G+KK  +R DLIAYLKE+TA
Sbjct:   11 FVQKCSQCHTVEKGGKHKTGPNLHQLFGRKTGEAEGFSYTAANKNKGITWGEDTLFEYLENPKKYIPGTKMIFAGIKKKTERDDLIAYLKEATA 104          
BLAST of CK936480 vs. ExPASy Swiss-Prot
Match: CYC_PECGU (Cytochrome c OS=Pectinaria gouldii PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.609e-29
Identity = 59/93 (63.44%), Postives = 71/93 (76.34%), Query Frame = 2
Query:    5 FKTKCAQCHTVVKGAGHKQGPNLNGLFGRQSGTTPRYSYSAANKGMAVIWEEKTLYNYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEST 283
            F  +CAQCHTV  G  HK GPNL+GLFGR++G  P +SY+ ANK   + W + TL+ YL NPKKYIPGTKM+F GLKK  +RADLIAYL+EST
Sbjct:   16 FVQRCAQCHTVEAGGKHKTGPNLSGLFGRKTGQAPGFSYTDANKNKGITWGKDTLWVYLENPKKYIPGTKMIFAGLKKKNERADLIAYLEEST 108          
The following BLAST results are available for this feature:
BLAST of CK936480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
CYC_CROVV9.432e-3063.83Cytochrome c OS=Crotalus viridis viridis PE=1 SV=2[more]
CYC_CROAT9.432e-3063.83Cytochrome c OS=Crotalus atrox PE=1 SV=2[more]
CYC_CROAD9.432e-3063.83Cytochrome c OS=Crotalus adamanteus PE=1 SV=2[more]
CYC_ANAPL9.432e-3062.77Cytochrome c OS=Anas platyrhynchos GN=CYC PE=1 SV=... [more]
CYC2_XENTR9.432e-3061.70Cytochrome c, testis-specific OS=Xenopus tropicali... [more]
CYC_DEBOC1.232e-2964.52Cytochrome c OS=Debaryomyces occidentalis GN=CYC1 ... [more]
CYC_COLLI1.232e-2962.77Cytochrome c OS=Columba livia GN=CYC PE=1 SV=2[more]
CYC1A_XENLA1.232e-2962.77Cytochrome c, somatic A OS=Xenopus laevis GN=cycs-... [more]
CYC_VARVA1.609e-2962.77Cytochrome c OS=Varanus varius PE=1 SV=2[more]
CYC_PECGU1.609e-2963.44Cytochrome c OS=Pectinaria gouldii PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004521_H02 Developing fruit flavedo at 80 DAFB Citrus sinensis cDNA clone F80DAB0001_IVF_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936480 ID=CK936480; Name=CK936480; organism=Citrus sinensis; type=EST; length=578bp
GGGCTTCAAGACCAAGTGCGCTCAGTGCCACACCGTCGTGAAAGGCGCTG
GTCACAAACAAGGACCAAATTTGAATGGACTTTTCGGGAGACAGTCCGGG
ACAACTCCCAGGTACTCCTATTCAGCTGCTAACAAGGGTATGGCTGTTAT
TTGGGAAGAGAAAACGTTGTACAATTACTTGCTTAACCCCAAGAAGTATA
TTCCTGGAACAAAGATGGTCTTCCCTGGATTGAAGAAGCCTCAGGATCGT
GCAGACCTCATTGCCTATTTGAAGGAGTCAACAGCCTGATTTTTGCTTAG
TGTGGGCTATTTTGCAACCATGGGAAGAGTATGGTCCCTGATGATTCAAT
AATTTTTTGTTTTTGGAAGAAAAAATGTTGTTCAAATGAGAATGTTCAAA
ATGTTTTACTCTTTTTAGCCATAGACAATTGGATAAAATGTTCTTCCAAA
GAAACTTTTCTTTGAGAGGCATTTCGCAAATTTTGATGATTTCTAAGCGC
TATGTATCCTAATTTTGCCACTTAATTTGTTATAATGGAATTTTAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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