CN186748

Overview
NameCN186748
Unique NameCN186748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length641
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.609e-21
Identity = 47/119 (39.50%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  150 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  PNP DP   +   ++  D  +Y R  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.938e-21
Identity = 52/148 (35.14%), Postives = 78/148 (52.70%), Query Frame = 3
Query:   63 RLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            R+A+E     ++ P    A P        +L  W  +I G A + + GG F L++HF  DYP KPPK  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP DP   E  H++  D  +Y+   R+  K+Y
Sbjct:    6 RIAKELSDLERDPPTSCSAGPV-----GDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKY 146          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UBC12_ARATH (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana GN=UBC12 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.298e-20
Identity = 52/152 (34.21%), Postives = 80/152 (52.63%), Query Frame = 3
Query:   51 IARGRLAEERKSWRKNHPHGFVAKPETLPDGSVNLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            +A  R++ E +  +++ P    A P    D    +  W  TI G   + + GG F +++ FS DYP KPPK  F    +HPN+   G++CL IL E   W PA T  ++L+ I  LL  PNP DP   E  HL+  D ++Y+   ++  ++Y
Sbjct:    1 MASKRISRELRDMQRHPPANCSAGPVAEED----IFHWQATIMGPHDSPYSGGVFTVSIDFSSDYPFKPPKVNFKTKVYHPNIDSKGSICLDILKEQ--WSPAPTTSKVLLSICSLLTDPNPNDPLVPEIAHLYKVDKSKYESTAQKWTQKY 146          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  150 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y    R+  ++Y
Sbjct:   29 DLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  162 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  162 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  162 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  162 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.695e-20
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  162 WHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D  +Y R  R+  ++Y
Sbjct:   33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 145          
BLAST of CN186748 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.892e-20
Identity = 46/119 (38.66%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  150 NLMVWHCTIPGKAGTDWEGGFFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 506
            +L  W  TI G   + ++GG F LT+HF  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PNP DP   E   ++  D   Y +  R+  ++Y
Sbjct:   29 DLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 145          
The following BLAST results are available for this feature:
BLAST of CN186748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
UB2D1_BOVIN7.609e-2139.50Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC4_YEAST9.938e-2135.14Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC12_ARATH1.298e-2034.21Probable ubiquitin-conjugating enzyme E2 12 OS=Ara... [more]
UBCD1_DROME1.695e-2038.66Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D2_XENLA1.695e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.695e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE1.695e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.695e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.695e-2040.00Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC2_CAEEL2.892e-2038.66Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003G02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186748 ID=CN186748; Name=CN186748; organism=Citrus sinensis; type=EST; length=641bp
TTTTTTTTTGAGAGCGAGTAAAAGAAAAGGAAAGAGCGACGTCTGGAGGC
ATAGCGCGTGGTCGGCTGGCTGAGGAGCGAAAGTCGTGGCGTAAAAATCA
TCCTCATGGTTTCGTGGCAAAGCCTGAGACGTTGCCGGACGGTTCGGTGA
ATCTGATGGTGTGGCATTGCACTATTCCCGGAAAAGCCGGAACTGATTGG
GAGGGTGGTTTCTTCCCACTCACTCTTCACTTCAGTGAAGATTACCCTAG
CAAGCCACCAAAGTGCAAGTTTCCGCAAGGATTTTTCCACCCTAATGTCT
ATCCATCTGGAACTGTTTGTCTATCAATCCTCAATGAGGACAATGGGTGG
AGACCAGCCATCACAGTGAAGCAAATTCTTGTCGGTATCCAAGACTTGTT
GGACCAGCCAAATCCTGCAGATCCTGCACAAACAGAAGGTTATCATCTCT
TCATTCAGGATGCTGCAGAGTACAAGAGAAGAGTTCGGCAGCAAGCCAAG
CAATACCCTGCACTCCTCTAAATTTATGTTCTGGTTTTTTTATGGACTTT
TATTAAACTCTTGGTAATTGTGAACTGTCTTTTGTAAAATGCCATTGCTA
AACTTGCTTTGTAAATAAAGTAACCATTTGTAACTAACAAA
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