CN186744

Overview
NameCN186744
Unique NameCN186744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_HELPH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori (strain HPAG1) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  107 MVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            +   +LGS+T GSI  PA     VGLKPT G  SR G+I      D IG I++ V DA  L D I G D++D    S +A   P    + F N N  K  ++ ++R+   +A N   V  A+EN L  L++ G  IV+
Sbjct:  140 LAVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILFDAISGHDNKD----STSANLKPT---QTFKNLNRDKRFKIAILRDHIKDASN--EVQLAYENTLKALKEMGHEIVE 268          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_HELPG (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori (strain G27) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  107 MVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            +   +LGS+T GSI  PA     VGLKPT G  SR G+I      D IG I++ V DA  L D I G D++D    S +A   P    + F N N  K  ++ ++R+   +A   S V  A+EN L  L++ G  IV+
Sbjct:  140 LAVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILFDAISGHDNKD----STSANLKPT---QTFKNLNKDKRFKIAILRDHIKDA--SSEVQLAYENTLKALKEMGHEIVE 268          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_HELP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Helicobacter pylori (strain P12) GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 52/138 (37.68%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  107 MVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            +   +LGS+T GSI  PA     VGLKPT G  SR G+I      D IG I++ V DA  L D I G D++D    S +A   P    + F N N  K  ++ ++R+   +A N   V  A+EN L  L++ G  IV+
Sbjct:  140 LAVAALGSDTGGSIRQPASYCGCVGLKPTYGRVSRYGLIAYCSSFDQIGPITQNVEDASILFDAISGHDNKD----STSANLKPT---QTFKNLNRDKRFKIAILRDHIKDASN--EVQLAYENTLKALKEMGHEIVE 268          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_DEIRA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Deinococcus radiodurans GN=gatA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.129e-13
Identity = 55/146 (37.67%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  116 VSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGST--VITAFENHLNTLRQSGATI----VDDLEMA 535
            VSLGS+T GS+  PA    V G KPT G  SR G++      D IG  +R+  D   L++VI G D RD  +    AR+  VGG       + L+G R+GV+R     +L G+T  V  A    L+ LR +GA +    + +LE A
Sbjct:  165 VSLGSDTGGSVRQPAALCGVYGFKPTYGRVSRYGLVAYASSLDQIGPFARSAEDLALLMNVIAGHDPRDATSLDAPARF-AVGG------ADSLRGLRVGVIR----ESLGGNTPGVEAALGATLDALRGAGAVVGEVSIPELEYA 299          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_SYNJB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 59/184 (32.07%), Postives = 86/184 (46.74%), Query Frame = 2
Query:  104 NMVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD------DLEMANVDVISNPGKSGELTAMLAGFKIALNEYLQELVS 637
            +   V+LGS+T GSI  PA    VVGLKPT GL SR G++      D +G   RTV D   LL  I G D  D       +  + +  Y Q L  + +KG ++GV+R+L      G     A +  +  L++ GA I++         +A   +I+ P ++    A   G K  L E    L+S
Sbjct:  161 DQAVVALGSDTGGSIRQPAAFCGVVGLKPTYGLVSRYGLVAFASSLDQVGPFGRTVEDVALLLQGIAGHDPMD-----STSLKVDIPDYSQALIPD-IKGFKIGVIRDLLGEGC-GEETRAAVQAAIQHLQELGAEILEIDCPSFRYGLATYYIIA-PSEASANLARYDGVKYGLREPADSLLS 336          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_METAC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 47/142 (33.10%), Postives = 71/142 (50.00%), Query Frame = 2
Query:  119 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVDDLEMANVD 544
            +LGS+T GS+ CPA    VVGLKPT G  SR GV+      + +G ++  V D   L+DVI G+D RD  +      Y       Q    + +KG ++GV +  F   ++   V  A  N ++     GAT   ++ M N++
Sbjct:  161 ALGSDTGGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAILMDVIAGYDRRDSTSIDSKTEY-------QKALVDDVKGLKIGVPKEFFGEGIHPG-VEKAVWNAIHKFESLGAT-RQEVSMPNIN 293          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_LACDA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 50/135 (37.04%), Postives = 71/135 (52.59%), Query Frame = 2
Query:  110 VTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATI 514
            V  +LGS+T GSI  PA  N + G+KPT G  SR G+I      D IG +S+ V D+  +L+VI G D RD   + +      V  Y  FL ++ +KG R+ V +   S+A+    V    E  +  LR +GA I
Sbjct:  158 VVAALGSDTGGSIRQPASFNGIFGIKPTYGRVSRWGLIAFASSLDQIGVMSKRVKDSAEVLNVIAGADDRDATVSEK-----EVPDYTSFLGKD-VKGLRVAVPKEYMSDAVE-EGVRKEVEAQIELLRANGAII 285          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_DESVV (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 53/135 (39.26%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  119 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFL-NENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            SLG++T GSI  PA     VGLKPT G  SR G+I      D IG ++RTV DA  ++ VI G D RD           PV  +   L + + L G R+GV    +   L+   V T+    L+  R  GATIVD
Sbjct:  169 SLGTDTGGSIRQPASLCGCVGLKPTYGRVSRFGLIAYGSSLDQIGPMTRTVEDAAIVMGVIAGHDKRDSTCADR-----PVEDFAAALASRHDLAGVRIGVPAEFWGEGLS-PEVATSCRAALDAARDLGATIVD 297          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_DESVH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gatA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.005e-13
Identity = 53/135 (39.26%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  119 SLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFL-NENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            SLG++T GSI  PA     VGLKPT G  SR G+I      D IG ++RTV DA  ++ VI G D RD           PV  +   L + + L G R+GV    +   L+   V T+    L+  R  GATIVD
Sbjct:  169 SLGTDTGGSIRQPASLCGCVGLKPTYGRVSRYGLIAYGSSLDQIGPMTRTVEDAAIVMGVIAGHDKRDSTCADR-----PVEDFAAALASRHDLAGVRIGVPAEFWGEGLS-PEVATSCRAALDAARDLGATIVD 297          
BLAST of CN186744 vs. ExPASy Swiss-Prot
Match: GATA_PROMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus GN=gatA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.045e-12
Identity = 48/138 (34.78%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  107 MVTVSLGSETHGSILCPADRNSVVGLKPTVGLTSRAGVIPVLPQHDTIGAISRTVSDAVYLLDVIVGFDSRDYEATSEAARYIPVGGYKQFLNENGLKGKRLGVVRNLFSNALNGSTVITAFENHLNTLRQSGATIVD 520
            + T +LGS+T GSI  PA    VVGLKPT G  SR G+I      D +G  S  VSDA  +L VI G D RD          +PV  Y   ++E+ + G R+G+++  F        V  +     + L+  GA +++
Sbjct:  161 LCTAALGSDTGGSIRQPASFCGVVGLKPTYGRVSRWGLIAFASSLDQVGPFSTNVSDAAEILQVIAGHDPRDSTCLD-----VPVPKYSDHISES-ISGLRIGLIKECFDQEGLDLEVKKSVLKAADQLQSLGAELIE 292          
The following BLAST results are available for this feature:
BLAST of CN186744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 264
Match NameE-valueIdentityDescription
GATA_HELPH6.129e-1337.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_HELPG6.129e-1337.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_HELP26.129e-1337.68Glutamyl-tRNA(Gln) amidotransferase subunit A OS=H... [more]
GATA_DEIRA6.129e-1337.67Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_SYNJB8.005e-1332.07Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_METAC8.005e-1333.10Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_LACDA8.005e-1337.04Glutamyl-tRNA(Gln) amidotransferase subunit A OS=L... [more]
GATA_DESVV8.005e-1339.26Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_DESVH8.005e-1339.26Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_PROMA1.045e-1234.78Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003F24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186744 ID=CN186744; Name=CN186744; organism=Citrus sinensis; type=EST; length=656bp
AGTGCCCTCTAGCGAATTTTGCCGGAACCCAAAAATGAATCCTTACCTTC
CATCAGGGGATCCATGTGGCTCAAGCAGTGGATCAGCTATTTCTGTTGCT
GCTAATATGGTGACAGTTTCGCTTGGAAGTGAGACTCATGGCTCCATCCT
CTGTCCTGCTGATCGTAACTCTGTAGTTGGGTTGAAACCAACTGTTGGAC
TCACCAGCCGAGCTGGAGTCATTCCAGTCTTGCCCCAACATGATACCATT
GGAGCCATAAGCAGGACAGTGTCTGATGCAGTTTATTTGCTTGATGTGAT
TGTTGGCTTTGACTCGAGAGATTATGAAGCAACAAGTGAAGCAGCGAGGT
ACATTCCTGTGGGAGGTTATAAGCAATTCCTAAACGAAAATGGGCTTAAA
GGGAAGAGATTAGGGGTTGTCAGAAATCTCTTTTCAAATGCTCTAAATGG
ATCTACTGTCATTACAGCTTTTGAGAATCATCTTAATACCCTAAGACAAA
GCGGTGCAACTATAGTGGATGATCTAGAAATGGCAAATGTTGATGTTATA
TCAAATCCTGGTAAAAGTGGGGAGCTGACGGCAATGCTGGCTGGTTTCAA
GATTGCTCTAAATGAGTACCTGCAAGAGCTTGTTTCTTCTCCTGTGAGGT
CACTTG
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