CK936395

Overview
NameCK936395
Unique NameCK936395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP1_SPIOL (Acyl carrier protein 1, chloroplastic OS=Spinacia oleracea GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.516e-20
Identity = 63/136 (46.32%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  125 SVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 532
            S T T     S S   K +QG               SFP+LR      F    AAK ET+DKVC IVK++LAL AD  VT +S+F+ LGADSLDTVEIVM L            AQ IST+Q AAD+IE L+E K+
Sbjct:    5 SATTTVRVQPSSSSLHKLSQGNGRCSSIVCLDWGKSSFPTLRTSRRRSF--ISAAKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP3_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.980e-20
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  242 SLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            +LR  +  R  VSCAAKPET++KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LIE+L+  K
Sbjct:   38 NLRRSIPTRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVLLK 133          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP1_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.586e-20
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  242 SLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            +L   +  R  VSCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV++AA+LI++L++ K
Sbjct:   38 NLSRSIPTRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSLDTVEIVMGLEEEFHIEMAEEKAQKITTVEEAAELIDELVQAK 133          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP2_ARATH (Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 3.377e-20
Identity = 56/102 (54.90%), Postives = 69/102 (67.65%), Query Frame = 2
Query:  230 KSFPSLRMRLAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 532
            +S  S  +R  P R  VSCAAKPETVDKVC +V+KQL+L     +T  +KFAALGADSLDTVEIVMGL            AQ+I+TV+ AA LIE+L+  K+
Sbjct:   34 RSSLSFNLRQLPTRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLFEKA 135          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP2_SPIOL (Acyl carrier protein 2, chloroplastic OS=Spinacia oleracea GN=ACL1.2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 62/137 (45.26%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  119 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            MAS+TG+S    S  C+  Q+                +  P +   L+    VSCAAKPE V KV  IVK QLAL  D  VTGE+KF+ +GADSLDTVEIVM L           +AQTI+T+Q+AAD+IE L + K
Sbjct:    1 MASITGSSV---SFKCAPLQSSFNSKNYALKSSVTFWRRTPVMPRGLS----VSCAAKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEIGADSLDTVEIVMKLEEEFGVTVEEENAQTITTIQEAADMIEALQQNK 130          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP1_ARATH (Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=ACP-1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.283e-19
Identity = 61/136 (44.85%), Postives = 78/136 (57.35%), Query Frame = 2
Query:  122 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            ASV+  ++C+ +   SF++                 +S PS R+       VSCAAK ET++KV  IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGL            AQ I+TV+ AA+LIE+LI  K
Sbjct:    7 ASVSLQTSCLATTRISFQKPALISNHGKTNLSFNLRRSIPSRRLS------VSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSLDTVEIVMGLEEEFNIQMAEEKAQKIATVEQAAELIEELINEK 136          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP3_ARATH (Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  254 RLAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETKS 532
            +L  R  V CAAKPETVDKVC +V+KQL+L     +T  +KFAALGADSLDTVEIVMGL            AQ+I+TV+ AA LIE+L+  K+
Sbjct:   43 QLPTRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADSLDTVEIVMGLEEEFGIEMAEEKAQSIATVEQAAALIEELLLEKA 135          
BLAST of CK936395 vs. ExPASy Swiss-Prot
Match: ACP5_BRANA (Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.C1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.853e-18
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  266 RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLXXXXXXXXXXXSAQTISTVQDAADLIEKLIETK 529
            R  +SCAAK ETV+KV +IVKKQL+L  D  V  E+KF  LGADSLDTVEIVMGL            AQ I+TV+ AA+LIE+L++ K
Sbjct:   46 RLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADSLDTVEIVMGLEEEFGIQMAEEKAQKIATVEQAAELIEELMQAK 133          
The following BLAST results are available for this feature:
BLAST of CK936395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ACP1_SPIOL1.516e-2046.32Acyl carrier protein 1, chloroplastic OS=Spinacia ... [more]
ACP3_BRANA1.980e-2056.25Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP1_BRANA2.586e-2055.21Acyl carrier protein, chloroplastic OS=Brassica na... [more]
ACP2_ARATH3.377e-2054.90Acyl carrier protein 2, chloroplastic OS=Arabidops... [more]
ACP2_SPIOL1.283e-1945.26Acyl carrier protein 2, chloroplastic OS=Spinacia ... [more]
ACP1_ARATH1.283e-1944.85Acyl carrier protein 1, chloroplastic OS=Arabidops... [more]
ACP3_ARATH2.189e-1955.91Acyl carrier protein 3, chloroplastic OS=Arabidops... [more]
ACP5_BRANA1.853e-1856.82Acyl carrier protein, chloroplastic OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004382_H08 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0001_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936395 ID=CK936395; Name=CK936395; organism=Citrus sinensis; type=EST; length=815bp
GGGGATTGCTCTCCTCTCAGTCTCAGACACACATTACATAGCACGCAGTC
TTCGTGCTCTTCGTCGTCCTCTCTCTCGCTCTCTCTCTTTTCAACTTCAA
ATCTCAGATCTCTATTCAATGGCTTCAGTTACAGGAACTTCAGCCTGCAT
GACCTCTCTGTCTTGCTCTTTCAAGCAGACCCAGGGTAGGATCTCTAGTG
TGAATTCAGTTTCACTTTCCATCAATGGGAAAAGCTTCCCATCCCTTAGA
ATGCGATTAGCACCCCGCTTCCGGGTTTCCTGTGCGGCCAAGCCAGAGAC
CGTGGATAAGGTTTGTCAAATTGTGAAGAAGCAGTTGGCACTCCCAGCAG
ATACTACCGTTACCGGAGAGTCAAAATTCGCTGCCCTTGGAGCTGATTCT
CTTGATACGGTTGAGATTGTGATGGGACTGGAGGAGGAATTTGGGATCAG
CGTTGAAGAAGAAAGTGCCCAGACCATCTCAACCGTTCAAGATGCTGCAG
ATCTGATTGAGAAGCTCATTGAGACCAAGAGTGCTTAATTAAAATGGTCT
GGAGAGAGAGCCGGGGCTTAGGGACTTAGTTCGTCTAGTTTCGTTTTCGA
TCTTTTTGTTGGCTTGTCTCAAGGAGTTTCTAGCTTGTATTGTGAACTTG
TCAGTGGTTTTTCTATTCTGTTGTTCCTTCTATTAGAGAGAACTCAATTA
ATCAGTTTGCTTGGAATCAATCATAAACATGTTCCAGTTTTCGGTTGTGG
ACCCTGTTATCGGCTTCACAATAAGTCAATCAAAGGAGAAAACAATATAT
AATGGANAAAAAAAA
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