CK936387

Overview
NameCK936387
Unique NameCK936387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length840
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: CYSM_MYCBO (Cysteine synthase B OS=Mycobacterium bovis GN=cysM PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.137e-29
Identity = 83/237 (35.02%), Postives = 120/237 (50.63%), Query Frame = 3
Query:  147 ELIGHTPMVYLNNVV-------DGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAML 836
            + +G+TP+V L  +        DG   R+ AKLE   P  S+KDR A  MI+ AE  GL+ PG T+L E TSGNTGI LA  A  +GY+LI +MP   S+ERR +L   GA++  +    G    V   +E+    P+  +L Q+ NPAN + HY  TGPE+  D   ++  F              RFL+E   N+K+   EP           G + ++ +  G +P + D  +L
Sbjct:    9 QALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATIL-EPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYG-------EGVYALRNMDEGFVPELYDPEIL 236          
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: CYSK2_SCHPO (Cysteine synthase 2 OS=Schizosaccharomyces pombe GN=cys12 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.076e-28
Identity = 83/219 (37.90%), Postives = 112/219 (51.14%), Query Frame = 3
Query:  126 EIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT-VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPA--VGFEGFVKKGEE-ILNRTPN------GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAV 752
            +I   V  LIG+T MV + ++       I AK E + P +S KDR+A  MI+ AE+ G + P ++  + E T+G+TGI +A +  S GY   I MPS  S E+  IL  LGA V    PA  V    FV        N T +      GY   QFENPAN + H+ +TGPEIW    GK+DAF              R+LK K+P+I V   +P  S +
Sbjct:   41 DIVNGVEGLIGNTKMVRIKSLSQATGCDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLCCSLGYDSRIYMPSDQSKEKSDILELLGAHVQRVTPAPIVDPNHFVNTARRNAANHTVDESIPGKGYFANQFENPANWQAHFNSTGPEIWRQCAGKLDAFIAGSGTGGTIAGISRYLKSKDPSITVCLADPPGSGL 259          
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: CYSK_YEAST (Putative cysteine synthase OS=Saccharomyces cerevisiae GN=YGR012W PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.139e-26
Identity = 74/200 (37.00%), Postives = 109/200 (54.50%), Query Frame = 3
Query:  132 KKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKT-VLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAV-----GFEGFVKKGEEILNRTPNG---YILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEK 704
            K+ V ELIG+TP+V + ++       I AKLE+  P  S KDR+A ++IK AE+ G +  G+   + E TSG+TGI +A +  + GY+  I +P   S+E+  +L +LGA V    PA       +    KK    L ++ NG       QFEN AN ++HY+TTGPEI + + G +DAF              +FLKE+
Sbjct:   46 KEGVEELIGNTPLVKIRSLTKATGVNIYAKLELCNPAGSAKDRVALNIIKTAEELGELVRGEPGWVFEGTSGSTGISIAVVCNALGYRAHISLPDDTSLEKLALLESLGATVNKVKPASIVDPNQYVNAAKKACNELKKSGNGIRAVFADQFENEANWKVHYQTTGPEIAHQTKGNIDAFIAGCGTGGTITGVAKFLKER 245          
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: CYSK_DICDI (Cysteine synthase OS=Dictyostelium discoideum GN=cysK PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.330e-26
Identity = 75/230 (32.61%), Postives = 109/230 (47.39%), Query Frame = 3
Query:  129 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVI 809
            I   + E +G+TP++ + ++ +     I  K E M P  S KDR+A  +I D E KGL+  G T+ +E T+G+TGI L  +  SRGY + + +P   S E+  +L  LGAE  +  P VG      F+    +        +   QF+N +N   HY  T  EIW  + G VD F               +LKE NPNI+ + I+P          PG  L   +  GVI
Sbjct:   38 ISNGIIETVGNTPLIRIKSLSEATGCEIYGKAEFMNPGGSPKDRVAREIILDGEKKGLLKKGSTI-VEATAGSTGISLTMLGKSRGYNVQLFIPDNVSKEKVDLLEMLGAETKIV-PIVGMNNANHFMHCAYQRCLGDDMAFYANQFDNLSNFNAHYNGTAKEIWEQTKGDVDGFVAAAGTGGTVAGISSYLKEVNPNIQNWLIDP----------PGSGLYSLVNTGVI 255          
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: Y4XP_RHISN (Putative cysteine synthase OS=Rhizobium sp. (strain NGR234) GN=NGR_a00730 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 76/242 (31.40%), Postives = 116/242 (47.93%), Query Frame = 3
Query:  141 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVY-----LADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQ---GIGAG-VIPPVLDVAMLD 839
            VT+LIG TP++ ++  V G  A +  K+E   P  S+KDR+A SM+  A   G + PG T+ +E +SGNTG GLA  A   G + I ++    + ++  ++RALGAE+        +  V      +   ++  + P    + Q +NPANPE  Y     E+       +DAF              + LK  NP ++   +EP+ S V   G+PG    Q   G  AG  +  VLD   +D
Sbjct:    6 VTQLIGQTPVMSID--VPGRNATLVLKIEKNNPGGSMKDRMARSMVIAALQDGRLPPGGTI-VESSSGNTGTGLALAALEFGLRFIAVVDHHAAPDKIRMMRALGAEIRYVEGDFREDEVAVVERQRLAAQLGAQLPGALFMNQSDNPANPE-GYTGLVDELVAQLPDGIDAFVGCVGTGGSMTGISQRLKRNNPAVRTIAVEPAGSIVF--GKPGHPYYQSGTGTPAGDEVGKVLDYGCID 241          
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: CYSM_RALME (Cysteine synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=cysM PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 69/232 (29.74%), Postives = 107/232 (46.12%), Query Frame = 3
Query:  141 VTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGA---EVYLADPAVGF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGK-HLIQGIGAGVIPPVL 821
            + E IG+TP+V L  +     A + AKLE++ P  SVKDR A  +++    +G I P   V IE +SGN  I LA I   +G +   ++    S     ILR  GA   +V   D   G+ E  +++  ++L    +   + Q+ NP N E HY     EI        D                R L++  P+++V G++   S +   GQP +   + GIGA  +P +L
Sbjct:    6 IIESIGNTPLVQLRRLFGRADAEVFAKLELLNPAGSVKDRPARYIVEKGLTEGAIGPHSHV-IESSSGNLAIALAMICGLKGLRFTAVVDPKISPTNLKILRCYGAGIEQVTAKDSQGGYLETRIERVRQMLREQRDAIWINQYANPLNWESHYYGEAAEILAQLAQPADVLVLGVSTSGTVHGIARRLRKAWPSMRVVGVDAVGSVLF--GQPSQARELPGIGASRVPELL 234          
BLAST of CK936387 vs. ExPASy Swiss-Prot
Match: CYSK_STAHA (Cysteine synthase (Fragment) OS=Staphylococcus haemolyticus GN=cysK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12
Identity = 37/83 (44.58%), Postives = 48/83 (57.83%), Query Frame = 3
Query:  594 TTGPEIWNDSGGK-VDAFXXXXXXXXXXXXXXRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLD 839
            TTGPEI     GK +DAF              + LKEK PNI++  IEP  S VL+GG+PG H +QG+GAG +P  L+  + D
Sbjct:    3 TTGPEIVEQFEGKQIDAFLAGVGTGGTLSGAGKVLKEKYPNIEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTDIYD 85          
The following BLAST results are available for this feature:
BLAST of CK936387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYSM_MYCBO7.137e-2935.02Cysteine synthase B OS=Mycobacterium bovis GN=cysM... [more]
CYSK2_SCHPO2.076e-2837.90Cysteine synthase 2 OS=Schizosaccharomyces pombe G... [more]
CYSK_YEAST1.139e-2637.00Putative cysteine synthase OS=Saccharomyces cerevi... [more]
CYSK_DICDI4.330e-2632.61Cysteine synthase OS=Dictyostelium discoideum GN=c... [more]
Y4XP_RHISN6.695e-1931.40Putative cysteine synthase OS=Rhizobium sp. (strai... [more]
CYSM_RALME3.674e-1729.74Cysteine synthase OS=Ralstonia metallidurans (stra... [more]
CYSK_STAHA6.070e-1244.58Cysteine synthase (Fragment) OS=Staphylococcus hae... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004383_A09 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936387 ID=CK936387; Name=CK936387; organism=Citrus sinensis; type=EST; length=840bp
GGGGAATGTATTTCACAGATAAATTACACCAGGAACTGGTATCTCCATTN
NNNNNNCCAAGTGCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTG
AAGTAGCTCCATGGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAAT
TAATAGGCCATACACCGATGGTGTATCTCAATAATGTTGTGGATGGTTGT
GTCGCCCGTATTGCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGT
CAAAGACAGAATTGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCT
TAATAACCCCAGGGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACC
GGCATTGGATTGGCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCAT
TATAATGCCATCAACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTT
TGGGAGCTGAGGTTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTT
GTTAAAAAGGGTGAGGAGATACTAAACAGAACACCTAATGGTTATATTCT
TGGACAATTTGAAAATCCCGCGAATCCGGAGATTCATTACGAGACAACTG
GCCCAGAGATATGGAACGACTCAGGAGGGAAGGTTGATGCTTTTATAGCA
GGGATAGGAACTGGTGGTACTGTAACTGGTGCGGGGAGATTCCTTAAAGA
AAAGAACCCAAATATTAAGGTATATGGTATAGAACCATCTGAAAGTGCAG
TCTTGAATGGAGGACAACCTGGGAAGCATCTGATCCAGGGTATTGGTGCC
GGTGTCATCCCTCCTGTTTTGGACGTTGCCATGCTCGATG
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