CX675117

Overview
NameCX675117
Unique NameCX675117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31
Identity = 73/191 (38.22%), Postives = 117/191 (61.26%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+T +LQK+S  MD FE+Q  N++V    ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  ED LS RLA L+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_DANRE (Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.260e-30
Identity = 77/195 (39.49%), Postives = 116/195 (59.49%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHA-----VPTKQQEKVDEDDLSGRLAELK 582
            +  LKFTSK L+R                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+M  + K+L+ +L++ +LQK+S  MD FE Q  N++V    ME +M+ +T+LSTP+ +V+ L+ Q+A++ GLEV   L Q  A A        + QEK  ED LS RLA L+
Sbjct:    5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQEK--EDQLSRRLAALR 197          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_MOUSE (Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 71/191 (37.17%), Postives = 116/191 (60.73%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L+  +LQK+S  MD FE+Q  N++V    ME +++ +T+L+TP+ +V+SL+ Q+A++ GLEV   L Q P   +   +   +  ED LS RLA L+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29
Identity = 69/191 (36.13%), Postives = 116/191 (60.73%), Query Frame = 1
Query:   13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582
            +  LKFT+K L++                       N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T   M  + K+MA + K+L+ +L++ +LQK+S  MD F++Q  N++V    ME +M+ + +L+TP+ +V++L+ Q+A++ GLEV   L Q P   +   +   +  ED LS RLA L+
Sbjct:    5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESSTRTQEDQLSRRLASLR 195          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: DID2_SCHPO (Vacuolar protein-sorting-associated protein 46 OS=Schizosaccharomyces pombe GN=did2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.956e-27
Identity = 68/160 (42.50%), Postives = 105/160 (65.62%), Query Frame = 1
Query:  118 GNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE----VSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELKA 585
            GN + ARIYA N+IRK+ E +N L+L+SR+DAV +RL T   M  ++ +MA +V+ ++ ++ T NL+ +S+ MD FE QF ++ VQ  +M  AM   T++ TP+ +V+ LMQ VAD+ GLE    ++  L  PAA +VPT     V++D+L  RL  L++
Sbjct:   21 GNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAA-SVPT-PAAPVEDDNLQERLRALRS 178          
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: DID2_YEAST (Vacuolar protein-sorting-associated protein 46 OS=Saccharomyces cerevisiae GN=DID2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.397e-21
Identity = 63/196 (32.14%), Postives = 100/196 (51.02%), Query Frame = 1
Query:    1 LLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVD--EDDLSGRLAELK 582
            L N +  LKFTSK LQ+Q                      N D +RIYA N+IRK+ E++  L+LASR+D+V +R+ T   M  ++ SM  + K ++ +L   NLQ+++  MD FE+QF +++      E     S ++     +V+ LM +VAD+ G+E+           +  K+    D  ED L+ RL  L+
Sbjct:    9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMELKQSAKLDNVPEIKAKEVNVDDEKEDKLAQRLRALR 203          
The following BLAST results are available for this feature:
BLAST of CX675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CHM1A_HUMAN1.944e-3138.22Charged multivesicular body protein 1a OS=Homo sap... [more]
CHM1A_DANRE1.260e-3039.49Charged multivesicular body protein 1a OS=Danio re... [more]
CHM1A_MOUSE4.789e-3037.17Charged multivesicular body protein 1a OS=Mus musc... [more]
CHM1A_XENLA1.067e-2936.13Charged multivesicular body protein 1a OS=Xenopus ... [more]
DID2_SCHPO4.956e-2742.50Vacuolar protein-sorting-associated protein 46 OS=... [more]
DID2_YEAST1.397e-2132.14Vacuolar protein-sorting-associated protein 46 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59H08-O15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675117 ID=CX675117; Name=CX675117; organism=Citrus sinensis; type=EST; length=613bp
CTGTTGAATCAGATCATGGACTTGAAATTCACGTCAAAATCTCTTCAGCG
CCAGGCGAGAAAATGCGAGAAGGAAGAGAAAGCCGAGAAATTGAAGGTGA
AAAAGGCCATCGAGAAAGGCAACATGGACGGCGCCAGAATCTACGCCGAG
AACTCCATCCGCAAGCGCACCGAACAGATGAACTATCTCCGCCTCGCTTC
TCGTCTCGACGCCGTCGTGGCTCGTCTCGACACCCAGGCCAAAATGACCA
CCATTAATAAGTCCATGGCTAACATCGTCAAGTCCCTTGAATCCTCTCTC
GCTACCGGTAATTTGCAGAAGATGTCAGAGACTATGGACTCATTTGAGAA
GCAGTTTGTGAACATGGAGGTTCAAGCAGAGTTCATGGAGAGTGCTATGG
CAGGGTCAACCTCATTATCCACACCAGAAGGGGAGGTCAACAGTTTGATG
CAACAGGTTGCTGATGATTATGGACTGGAGGTTTCAGTTGGGCTCCCACA
ACCGGCTGCACATGCTGTGCCAACCAAGCAACAAGAGAAAGTTGATGAGG
ACGATTTATCAGGGCGTCTTGCCGAGCTCAAGGCTAGAGGTTAATCTGGA
GTTGGCTCATTCA
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