CX675117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_HUMAN (Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.944e-31 Identity = 73/191 (38.22%), Postives = 117/191 (61.26%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+T +LQK+S MD FE+Q N++V ME +M+ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q P + + + ED LS RLA L+ Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_DANRE (Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.260e-30 Identity = 77/195 (39.49%), Postives = 116/195 (59.49%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHA-----VPTKQQEKVDEDDLSGRLAELK 582 + LKFTSK L+R N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+M + K+L+ +L++ +LQK+S MD FE Q N++V ME +M+ +T+LSTP+ +V+ L+ Q+A++ GLEV L Q A A + QEK ED LS RLA L+ Sbjct: 5 LFQLKFTSKQLERLAKKAEKDSKSEQAKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMTQVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLILQIAEESGLEVEDQLSQLPAGASALGETSARAQEK--EDQLSRRLAALR 197
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_MOUSE (Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a PE=1 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30 Identity = 71/191 (37.17%), Postives = 116/191 (60.73%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L+ +LQK+S MD FE+Q N++V ME +++ +T+L+TP+ +V+SL+ Q+A++ GLEV L Q P + + + ED LS RLA L+ Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQEQVDSLIVQIAEENGLEVLDQLSQLPEGASAVGESSVRSQEDQLSRRLAALR 195
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: CHM1A_XENLA (Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.067e-29 Identity = 69/191 (36.13%), Postives = 116/191 (60.73%), Query Frame = 1 Query: 13 IMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQ-PAAHAVPTKQQEKVDEDDLSGRLAELK 582 + LKFT+K L++ N++ AR+YAEN+IRK+ E +N+LR+ASR+DAV +++ T M + K+MA + K+L+ +L++ +LQK+S MD F++Q N++V ME +M+ + +L+TP+ +V++L+ Q+A++ GLEV L Q P + + + ED LS RLA L+ Sbjct: 5 LFQLKFTAKQLEKLAKKAEKDSNTEQAKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQEQVDNLIVQIAEENGLEVMDQLNQLPQGASSVGESSTRTQEDQLSRRLASLR 195
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: DID2_SCHPO (Vacuolar protein-sorting-associated protein 46 OS=Schizosaccharomyces pombe GN=did2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.956e-27 Identity = 68/160 (42.50%), Postives = 105/160 (65.62%), Query Frame = 1 Query: 118 GNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLE----VSVGLPQPAAHAVPTKQQEKVDEDDLSGRLAELKA 585 GN + ARIYA N+IRK+ E +N L+L+SR+DAV +RL T M ++ +MA +V+ ++ ++ T NL+ +S+ MD FE QF ++ VQ +M AM T++ TP+ +V+ LMQ VAD+ GLE ++ L PAA +VPT V++D+L RL L++ Sbjct: 21 GNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAA-SVPT-PAAPVEDDNLQERLRALRS 178
BLAST of CX675117 vs. ExPASy Swiss-Prot
Match: DID2_YEAST (Vacuolar protein-sorting-associated protein 46 OS=Saccharomyces cerevisiae GN=DID2 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.397e-21 Identity = 63/196 (32.14%), Postives = 100/196 (51.02%), Query Frame = 1 Query: 1 LLNQIMDLKFTSKSLQRQXXXXXXXXXXXXXXXXXXXXXGNMDGARIYAENSIRKRTEQMNYLRLASRLDAVVARLDTQAKMTTINKSMANIVKSLESSLATGNLQKMSETMDSFEKQFVNMEVQAEFMESAMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVPTKQQEKVD--EDDLSGRLAELK 582 L N + LKFTSK LQ+Q N D +RIYA N+IRK+ E++ L+LASR+D+V +R+ T M ++ SM + K ++ +L NLQ+++ MD FE+QF +++ E S ++ +V+ LM +VAD+ G+E+ + K+ D ED L+ RL L+ Sbjct: 9 LENTLFQLKFTSKQLQKQANKASKEEKQETNKLKRALNE-NEDISRIYASNAIRKKNERLQLLKLASRVDSVASRVQTAVTMRQVSASMGQVCKGMDKALQNMNLQQITMIMDKFEQQFEDLDTSVNVYEDMGVNSDAMLVDNDKVDELMSKVADENGMELKQSAKLDNVPEIKAKEVNVDDEKEDKLAQRLRALR 203 The following BLAST results are available for this feature:
BLAST of CX675117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675117 ID=CX675117; Name=CX675117; organism=Citrus sinensis; type=EST; length=613bpback to top |