CK936374

Overview
NameCK936374
Unique NameCK936374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Developing fruit 24 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK936374 vs. ExPASy Swiss-Prot
Match: CX6B2_RAT (Cytochrome c oxidase subunit 6B2 OS=Rattus norvegicus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.183e-15
Identity = 30/73 (41.10%), Postives = 49/73 (67.12%), Query Frame = 3
Query:   78 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 287
            T P D RFP  NQTR+C+  ++++HRC+     +G+ +  C+ + + + SLCP  W+++WNEQ + GTFPG +
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMDRRGKNTQACDYYFRVFHSLCPVSWVQRWNEQIKQGTFPGKI 88          
BLAST of CK936374 vs. ExPASy Swiss-Prot
Match: CX6B2_HUMAN (Cytochrome c oxidase subunit 6B2 OS=Homo sapiens GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 3
Query:   78 TAPADFRFPTTNQTRHCFTRYIEFHRCLAAK---GEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 287
            T P D RFP+ NQ R+C+  ++++HRCL  +   G+ +  CE + + Y SLCP  W+E WNEQ +NG F G +
Sbjct:   16 TPPFDPRFPSQNQIRNCYQNFLDYHRCLKTRTRRGKSTQPCEYYFRVYHSLCPISWVESWNEQIKNGIFAGKI 88          
BLAST of CK936374 vs. ExPASy Swiss-Prot
Match: CX6B2_BOVIN (Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.069e-14
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   78 TAPADFRFPTTNQTRHCFTRYIEFHRCLAA---KGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFPGPL 287
            T P D RFP  NQTR+C+  ++++HRC+     +G+ +  CE + + Y SLCP  W+++W EQ ++GTF G +
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRWKEQIKDGTFAGKI 88          
BLAST of CK936374 vs. ExPASy Swiss-Prot
Match: COX6B_DICDI (Probable cytochrome c oxidase subunit 6B OS=Dictyostelium discoideum GN=DDB_G0284693 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.872e-12
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:   69 ELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESNECERFAKYYRSLCPGDWIEKWNEQRENGTFP 278
            +L+TAP + RFP  NQT+HC+  Y++++ C+     ++++C+ F     SLCP  WI +W+EQ+    FP
Sbjct:    5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEWDEQKAADLFP 74          
The following BLAST results are available for this feature:
BLAST of CK936374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CX6B2_RAT6.183e-1541.10Cytochrome c oxidase subunit 6B2 OS=Rattus norvegi... [more]
CX6B2_HUMAN1.377e-1443.84Cytochrome c oxidase subunit 6B2 OS=Homo sapiens G... [more]
CX6B2_BOVIN3.069e-1441.10Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=... [more]
COX6B_DICDI2.872e-1238.57Probable cytochrome c oxidase subunit 6B OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004383_B04 Developing fruit 24 DAFB Citrus sinensis cDNA clone T24DAB0003_IF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK936374 ID=CK936374; Name=CK936374; organism=Citrus sinensis; type=EST; length=560bp
GGGAAATCAAAATTTCTCGCCTCTTTGTTTCTCTCTTGAACTGATCAAGC
ATGGCCGCCGACGAGATTGAACTCAAAACTGCTCCTGCTGATTTCCGGTT
TCCAACAACAAATCAAACCAGACATTGCTTCACCCGCTACATTGAGTTTC
ATAGGTGCTTGGCAGCAAAGGGGGAAGAATCTAATGAATGTGAAAGATTT
GCTAAATACTATCGTTCTCTCTGCCCCGGTGACTGGATTGAGAAGTGGAA
CGAGCAGAGGGAAAATGGGACGTTCCCAGGTCCTCTTTAAACTTGCATCA
GCACTCGGGTGGCTTTTCTTTTGGATGAAACGTTCATATTGCTCTGTTTA
TTTGCTCCCTGATCATGTTTTTTCATTTAAGCCTGAAAACCAATAAGGCA
ACAGTTAAAGATTGTTTTGAATGTTGATGCTTTAGTAGTTTAGTTATTGA
CTTATTGCGCATGGTCAATAAGCAAAAGACCTTTGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAA
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