CX046849

Overview
NameCX046849
Unique NameCX046849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NQO14_PARDE (NADH-quinone oxidoreductase subunit 14 OS=Paracoccus denitrificans GN=nqo14 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.903e-41
Identity = 88/206 (42.72%), Postives = 135/206 (65.53%), Query Frame = -3
Query:   33 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATL---QQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGAL---AKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 632
            LS  +S +  +MW PD+YEGSPTPVTAF + APK++  A I+R+ ++ ++G  +    QI    ++ SM LG++A + QT +KRL+A+SSI H+G+   G + GT  G+Q++L+ + IYA+M I  FA +L++ +  V  + DL AL   A T+P+ A+   + MFS AG+PP  GF +KF +  AA+  G  +LA +GV+ SVIG
Sbjct:  214 LSFKVSAVPFHMWTPDVYEGSPTPVTAFFATAPKVAAMALIARL-VFDAFGHVIGDWSQIVAALAVMSMFLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVP-VTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAVDAGMGWLAVLGVIASVIG 417          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_SPHWW (NADH-quinone oxidoreductase subunit N OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoN PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.418e-40
Identity = 94/205 (45.85%), Postives = 132/205 (64.39%), Query Frame = -3
Query:   33 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALR---QTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 632
            L+  IS +  +MW PD+YEG+PTPVTAF + APK++  A + RV I   GS   T +QI  F ++AS ILGA+AA+ QT +KRLLA+SSI +VG+   G + G+ +G+ + +  + +Y  MT+ +F  VL +R      V+ IA L  L+++ P  A  F+I MFS AGIPPL GF  KF +F A +  G + LA VG+ TSVIG
Sbjct:  214 LAFKISAVPFHMWTPDVYEGAPTPVTAFFASAPKVAGMALLLRVAIEAMGSGTDTWRQIVVFAALASTILGAVAAIGQTSMKRLLAYSSINNVGFALFGLAAGSADGVAATMTYMAVYVAMTLGSFICVLQMRGQDGQPVETIASLSGLSRSRPGLAAAFAIFMFSLAGIPPLFGFWPKFLVFDALVRAGFWPLAMVGIATSVIG 418          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_RHOCA (NADH-quinone oxidoreductase subunit N OS=Rhodobacter capsulatus GN=nuoN PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.679e-39
Identity = 85/204 (41.67%), Postives = 128/204 (62.75%), Query Frame = -3
Query:   33 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ--TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 632
            L+  +S +  +MW PD+YEGSPTPVTAF + APK++  A I+RV    +G       QI    ++ASM LGA+A + Q  +KRL+A+SSI H+G+   G + GT  G++S+L+ + IY +M +  FA +L++ +    V  IA L  L+KT+P+ A    + +FS AG+PP+ GF +KF +  AA+G G  ++    VV SVIG
Sbjct:  213 LAFKVSAVPFHMWTPDVYEGSPTPVTAFFATAPKLAAMALIARVVHDAFGQVPGEWGQILAALALASMYLGAIAGIGQRDIKRLMAYSSISHMGFGLLGLAAGTAAGVESMLLYMTIYIVMNVGTFAFILSMERDGKPVTEIAALNMLSKTDPVKAFALLVLLFSLAGVPPMLGFFAKFAVIKAAIGAGFVWVPVAAVVASVIG 416          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_SPHAL (NADH-quinone oxidoreductase subunit N OS=Sphingopyxis alaskensis GN=nuoN PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 87/205 (42.44%), Postives = 127/205 (61.95%), Query Frame = -3
Query:   33 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 632
            L   IS +  +MW PD+YEG+PTPVT F + APK++  A ++R+ I   G      QQI  F ++AS+ILGA+ A+ Q  +KRLLA+SSI +VG++  G + GT +G++ +L  + +Y + T+ AF +VL LR     +V+ I  L  L++  P  A   S+ +FS AGIPPL GF  K+ +F AA+      LA  G+V SVIG
Sbjct:  209 LGFKISAVPFHMWTPDVYEGAPTPVTTFFASAPKVAAMALMARIVIDAMGPAVGAWQQIVIFLALASIILGAVGAIGQKNIKRLLAYSSINNVGFMLIGLAAGTQQGVEGVLTYLLVYLVTTLGAFLVVLQLRDEGGNQVESIPALAGLSQRRPGLAAAMSVFLFSLAGIPPLFGFWPKYLVFEAAVNANLVPLAVAGIVASVIG 413          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_ERYLH (NADH-quinone oxidoreductase subunit N OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoN PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 85/205 (41.46%), Postives = 125/205 (60.98%), Query Frame = -3
Query:   33 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQ---TRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIG 632
            L+  I+ +  +MW PD+YEG+PTPVT F + APK++  A  +RV +  +G      QQI  F ++AS++LGAL A+ QT +KRLLA+SSI +VG+I  G +  T+ G+ ++L  + IY +M + +F  +L L+    T ++   D+  L+ T P  A      MFS AGIPPL GF  KF +F AA+      LA +G+  SVIG
Sbjct:  218 LAFKIAAVPFHMWTPDVYEGAPTPVTTFFATAPKVAAVALTARVALSPFGEQTEAWQQIVIFAALASIVLGALGAIGQTNLKRLLAYSSINNVGFILIGLAASTVAGLSAMLTYLAIYVVMALGSFVALLMLKDEDGTPLETFDDIAGLSTTRPALAWCLLFLMFSLAGIPPLLGFWGKFVVFQAAVQADMVLLAALGIAASVIG 422          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_HIRBI (NADH-quinone oxidoreductase subunit N OS=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) GN=nuoN PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 83/204 (40.69%), Postives = 125/204 (61.27%), Query Frame = -3
Query:   36 SLSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 635
            +LS   S    ++W PD+YEG+PTPV  F S APK++  A ++ +   ++G Y  +   I    S  SM++GA   +AQ  +KRLLA+SSI +VGY   G + G + G  S+L  + IY + T+  F IVLA+R+   +V+ I+DL  L+ + P  A+  ++ +FS AGIPP+AGF  K+ +F AAL    Y+L  VGV+ SV+
Sbjct:  210 ALSFKASAAPFHVWTPDVYEGAPTPVVTFFSTAPKLATVAVLANIMFTVFGVYEESWMLIIAIVSAISMLVGAFGGLAQNNIKRLLAYSSIANVGYALMGVAAGEVNGAASVLTYMTIYVITTLGMFGIVLAMRRRDGQVEEISDLNGLSTSRPGLAVAMTVLVFSVAGIPPMAGFLGKWVVFEAALKSELYWLVAVGVIGSVV 413          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_MAGSM (NADH-quinone oxidoreductase subunit N OS=Magnetococcus sp. (strain MC-1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 85/202 (42.08%), Postives = 122/202 (60.40%), Query Frame = -3
Query:   36 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFI--YGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRV-KYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 632
            LS  I+    +MWAPD+YEG+PT VTAF++  PKI+  A + RV +  +G   AT   I    ++ SM +GALA + Q+ +KRLLA+SSIGHVGY   G + G   G +++L+ + IY  M + AF ++L L +      I D   L+   P  A+  +I MFS AGIPPLAGF +K  +F AA+    Y +A +GV+ S +
Sbjct:  220 LSFKIAAAPFHMWAPDVYEGAPTSVTAFMAAMPKIAAFAALFRVLVEAFGPMHATWGPIMALLAVVSMGVGALAGLGQSNIKRLLAYSSIGHVGYALIGLAVGNQMGYEAVLVYLTIYIFMNVGAFGLILVLNKEGFGDQIEDYKGLSAKRPGLALLMAIFMFSMAGIPPLAGFMAKLQIFMAAIDAHMYTVAILGVLFSAV 421          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C_MICAN (NAD(P)H-quinone oxidoreductase subunit 2 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.019e-36
Identity = 85/197 (43.15%), Postives = 117/197 (59.39%), Query Frame = -3
Query:   39 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISR--VFIYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSV 620
            IS +  + W PD+YEGSPTPV AFLS+  K +  A   R  V ++G      + IF   +I SMILG + A+AQT +KR+LA+SSIG  G++  G + GT  G  S++  + IY  M + AFA ++L   +T    IA+   L + +P+  +  SI + S  GIPPLAGF  K YLF+A    G Y L  VG+VTSV
Sbjct:  228 ISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTVFGLVSEQWRFIFIALAILSMILGNVVALAQTSMKRMLAYSSIGQAGFVMIGLTAGTDAGYSSMIFYLLIYLFMNLGAFACVILFALRTGTDQIAEYSGLYQKDPLLTLCLSICLLSLGGIPPLAGFFGKIYLFWAGWQAGLYALVLVGLVTSV 424          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_ACIF2 (NADH-quinone oxidoreductase subunit N OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=nuoN PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.602e-36
Identity = 82/204 (40.20%), Postives = 123/204 (60.29%), Query Frame = -3
Query:    3 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGA--TLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRWAAGRLPRV 602
            +MW PD+Y+G+PT VTAFL+ APKI   A I R+ + G YG   + QQIF   ++ S+++G + A+AQ  +KR+LA+S+IGHVG++  G   GT  G+ S      +Y LM++  F ++L + +     + I D   LA+  P  A    I MFS AG+PP  GF +K  +F A +  G  +LA VGV+ +VIG +   R+ +V
Sbjct:  226 HMWLPDVYQGAPTVVTAFLASAPKIGAFALIIRLLVDGGYGMQESWQQIFVALTVVSLVVGNVIAIAQQNIKRMLAYSTIGHVGFMLLGIVAGTEAGLASAFFYTVVYTLMSLAGFGMILLVSRAGFEAERIDDFKGLAQRKPWYAFLMMIVMFSMAGVPPTVGFYAKLAVFQAVVAAGYVWLAVVGVLLAVIGAFYYLRVVKV 429          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON1_THEYD (NADH-quinone oxidoreductase subunit N 1 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.623e-36
Identity = 84/200 (42.00%), Postives = 115/200 (57.50%), Query Frame = -3
Query:   27 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF--IYGSYGATLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFAIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRW 620
            I+L+  +MWAPD+YEG+PTPVTAF+S  PK++I     RV   I+  Y           SIA+M  G   A+ Q  +KR+LA+SSI H GYI  G   GT  G  S++  +FIY LM I AFA+V+A  +   + I +   L K +P  AI   I MFS  G+PP AGF  KF +F  A+  G  +L  + V+ +VI  +
Sbjct:  214 IALVPFHMWAPDVYEGAPTPVTAFISTLPKVAILGAFGRVLVEIFRDYYIDWSNFLIVLSIATMATGNFFALIQKNIKRMLAYSSIAHAGYIIIGVIVGTQSGFNSVVAYMFIYTLMNIGAFAMVIAFNE---ESIENYKGLHKFHPALAIAMLIFMFSLTGVPPTAGFIVKFNIFLQAVKAGFTWLVVIAVIFTVISAY 410          
The following BLAST results are available for this feature:
BLAST of CX046849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NQO14_PARDE8.903e-4142.72NADH-quinone oxidoreductase subunit 14 OS=Paracocc... [more]
NUON_SPHWW4.418e-4045.85NADH-quinone oxidoreductase subunit N OS=Sphingomo... [more]
NUON_RHOCA1.679e-3941.67NADH-quinone oxidoreductase subunit N OS=Rhodobact... [more]
NUON_SPHAL1.088e-3842.44NADH-quinone oxidoreductase subunit N OS=Sphingopy... [more]
NUON_ERYLH1.856e-3841.46NADH-quinone oxidoreductase subunit N OS=Erythroba... [more]
NUON_HIRBI1.203e-3740.69NADH-quinone oxidoreductase subunit N OS=Hirschia ... [more]
NUON_MAGSM7.799e-3742.08NADH-quinone oxidoreductase subunit N OS=Magnetoco... [more]
NU2C_MICAN1.019e-3643.15NAD(P)H-quinone oxidoreductase subunit 2 OS=Microc... [more]
NUON_ACIF26.602e-3640.20NADH-quinone oxidoreductase subunit N OS=Acidithio... [more]
NUON1_THEYD8.623e-3642.00NADH-quinone oxidoreductase subunit N 1 OS=Thermod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046849 ID=CX046849; Name=CX046849; organism=Citrus sinensis; type=EST; length=652bp
CTTACTCGTGGCAACCTTCCGGCCGCCCAACGACCTATAACGCTAGTCAC
TACTCCCACTGGGGCTAGGAAGTAAGCCCCACAACCCAAAGCGGCGAAGA
ACAAATAGAATTTGCTACAAAAGCCGGCTAACGGGGGTATTCCCGCGTAT
GAGAACATAGTAATGGAGAAGGTAATAGCCGAAATAGGATTCGTTTTGGC
TAGAGCGCCCAAATCCGCTATATATTTGACACGGGTTTGCCGTAATGCTA
AAACTATGGCGAATGCATCTATCGTCATTAATGCATAAATAAAGATACCA
ATTAGTAGTGATTGAATTCCTTCTATGGTTCCACATGAGAAACCAGTACG
AATATAACCTACATGTCCAATTGAACTATGAGCTAGAAGTCTTTTTACTT
TCGTTTGGGCCATGGCGGCCAGTGCTCCTAAGATCATAGAAGCAATGCTG
CAGAAAAAGAAGATTTGTTGCAATGTAGCTCCATAGGAACCATAAATAAA
AACACGTGAAATATTAGCAGAAATAGATATTTTAGGCGCAATAGAAAGGA
ATGCTGTAACCGGGGTGGGTGAACCCTCATAGATATCAGGTGCCCACATA
TATAGAGTCAAAAGAGATATGGAGCCCGAAAGGGAGGGGGGTTTTCTTCG
GG
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