CX046849

Overview
NameCX046849
Unique NameCX046849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C_MARPO (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Marchantia polymorpha GN=ndhB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 82/202 (40.59%), Postives = 117/202 (57.92%), Query Frame = -3
Query:   36 LSGSISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVF-IYGSYGATLQQIFF-FCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 632
            L+  +SL+  + W PDIYEGSPTPV AFLS+  KI+  A  +R+  I  S+     +IF    +I SMILG L A+ QT +KR+LA+SSI  +GYI  G   G ++G  S+ I +F Y  M +  FA I+L   +T    I D   L   +P+ + + ++ + S  G+PPL GF  K YLF+     G Y L  + ++TSVI
Sbjct:  223 LAFKLSLVPFHQWTPDIYEGSPTPVVAFLSVTSKIAGLALATRILNILFSFSPNEWKIFLEILAILSMILGNLVAITQTSMKRMLAYSSISQIGYILIGLITGDLKGYTSMTIYVFFYIFMNLGTFACIILYSLRTGTDNIRDYAGLYIKDPLLSFSLTLCLLSLGGLPPLTGFFGKLYLFWCGWQSGFYLLVFIALITSVI 424          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C_CYAP7 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Cyanothece sp. (strain PCC 7424) GN=ndhB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQIFFFCSIA--SMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEGIQSLLIGIFIYALMTIDAF-AIVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            IS +  + W PD+YEGSPTPV AFLS+  K +  A   R+ +      + Q  F F ++A  SM+LG + A+AQT +KR+LA+SSIG  G++  G +  +  G  S++  + IY  M + AF  I+L   +T    I++   L + +P+  +  SI + S  GIPPLAGF  K YLF+A    G Y L  +G+VTSVI
Sbjct:  228 ISAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFALVSEQWHFIFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLTANSDAGYSSMIFYLLIYLFMNLGAFICIILFALRTGTDQISEYSGLYQKDPLLTLGLSICLLSLGGIPPLAGFFGKIYLFWAGWQSGLYGLVLLGLVTSVI 425          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C2_ACOCL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Acorus calamus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            +SL   + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K +LF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C2_ACOAM (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Acorus americanus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            +SL   + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K +LF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C1_ACOCL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus calamus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            +SL   + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K +LF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C1_ACOAM (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus americanus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.071e-34
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            +SL   + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K +LF+     G YFL  +G++TSV+
Sbjct:  244 LSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTFARIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLHLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C2_NYMAL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nymphaea alba GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.054e-33
Identity = 80/199 (40.20%), Postives = 118/199 (59.30%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            +S    + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  GIPPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSPAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIAMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C1_NYMAL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nymphaea alba GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.054e-33
Identity = 80/199 (40.20%), Postives = 118/199 (59.30%), Query Frame = -3
Query:   36 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 620
            +S    + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M +  FA IVL   +T    I D   L   +P  A++ ++ + S  GIPPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  244 LSPAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIAMNLGTFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSSALCLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVV 442          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NUON_ANAD2 (NADH-quinone oxidoreductase subunit N OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=nuoN PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 83/216 (38.43%), Postives = 122/216 (56.48%), Query Frame = -3
Query:   27 ISLLTLYMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGA-----TLQQIFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCGTIEG-----IQSLLIGIFIYALMTIDAFAIVLAL-RQTRVKY-------IADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGRW 620
            I+ +  + W PD+YEG+PTPVTAF++   K +  A + R+F+    G+     +L  +    ++ +MI G L A+ Q  VKR+LA+SSIGH GY+  G     + G     +  LL  +  Y    I AFA+V AL R+TR  +       +     LA+  P  A   ++ +FS AG+PP AGF  KFY+F AA+G G Y LA +GV+TSV+G +
Sbjct:  215 IAAVPFHAWTPDVYEGAPTPVTAFMAAGVKTAAFAVLVRLFLATESGSAAMSTSLGTVLSALAVLTMIFGNLLALPQRSVKRMLAYSSIGHAGYLLVGVVSAVVAGARDKALAGLLFYLAAYTATVIGAFAVVGALERRTRGDFEPADAWDLDRFAGLARRRPALAFAMAVFLFSLAGVPPTAGFIGKFYIFKAAMGAGLYGLAVLGVLTSVLGAY 430          
BLAST of CX046849 vs. ExPASy Swiss-Prot
Match: NU2C2_IPOPU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Ipomoea purpurea GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.377e-33
Identity = 79/193 (40.93%), Postives = 117/193 (60.62%), Query Frame = -3
Query:   36 YMWAPDIYEGSPTPVTAFLSIAPKISISANISRVFIYGSYGATLQQ--IFFFCSIASMILGALAAMAQTKVKRLLAHSSIGHVGYIRTGFSCG-TIEGIQSLLIGIFIYALMTIDAFA-IVLALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVI 602
            + W PD+YEGSPTPV AFLS+  K++ SA+ +R+F    Y ++ +   +    +I SMILG L A+ QT +KR+LA+SSIG +GY+  G   G + +G  S++  +  Y  M + AFA IVL   +T    I D   L   +P  A++ ++ + S  G+PPLAGF  K YLF+     G YFL  +G++TSV+
Sbjct:  250 HQWTPDVYEGSPTPVVAFLSVTSKVAASASATRIFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGAFACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGLPPLAGFFGKLYLFWCGWQAGLYFLVFIGLLTSVV 442          
The following BLAST results are available for this feature:
BLAST of CX046849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU2C_MARPO8.071e-3440.59NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_CYAP78.071e-3440.40NAD(P)H-quinone oxidoreductase subunit 2 OS=Cyanot... [more]
NU2C2_ACOCL8.071e-3439.70NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_ACOAM8.071e-3439.70NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_ACOCL8.071e-3439.70NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_ACOAM8.071e-3439.70NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C2_NYMAL1.054e-3340.20NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_NYMAL1.054e-3340.20NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON_ANAD21.377e-3338.43NADH-quinone oxidoreductase subunit N OS=Anaeromyx... [more]
NU2C2_IPOPU1.377e-3340.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10F04_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10F04-L7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046849 ID=CX046849; Name=CX046849; organism=Citrus sinensis; type=EST; length=652bp
CTTACTCGTGGCAACCTTCCGGCCGCCCAACGACCTATAACGCTAGTCAC
TACTCCCACTGGGGCTAGGAAGTAAGCCCCACAACCCAAAGCGGCGAAGA
ACAAATAGAATTTGCTACAAAAGCCGGCTAACGGGGGTATTCCCGCGTAT
GAGAACATAGTAATGGAGAAGGTAATAGCCGAAATAGGATTCGTTTTGGC
TAGAGCGCCCAAATCCGCTATATATTTGACACGGGTTTGCCGTAATGCTA
AAACTATGGCGAATGCATCTATCGTCATTAATGCATAAATAAAGATACCA
ATTAGTAGTGATTGAATTCCTTCTATGGTTCCACATGAGAAACCAGTACG
AATATAACCTACATGTCCAATTGAACTATGAGCTAGAAGTCTTTTTACTT
TCGTTTGGGCCATGGCGGCCAGTGCTCCTAAGATCATAGAAGCAATGCTG
CAGAAAAAGAAGATTTGTTGCAATGTAGCTCCATAGGAACCATAAATAAA
AACACGTGAAATATTAGCAGAAATAGATATTTTAGGCGCAATAGAAAGGA
ATGCTGTAACCGGGGTGGGTGAACCCTCATAGATATCAGGTGCCCACATA
TATAGAGTCAAAAGAGATATGGAGCCCGAAAGGGAGGGGGGTTTTCTTCG
GG
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