CN186680

Overview
NameCN186680
Unique NameCN186680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+IDARN LE+Y Y++KNQI DK+KL  KL S++K+ IE AV+E +EWL+ +Q A+ ED++ K KE+E V  PI++ +Y  S G P  G E
Sbjct:  552 KLKERIDARNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKSKKKELEEVVQPIVSKLY-GSAGPPPTGEE 644          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.613e-21
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ IE AV+E +EWL+ +Q A+ ED++ K KE+E +  PI+  +Y  +G  P  G E
Sbjct:  555 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIVGKLYGGAGAPPPEGAE 648          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.613e-21
Identity = 48/94 (51.06%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  SGG P  G E
Sbjct:  555 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSGGPPPTGEE 647          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.106e-21
Identity = 46/91 (50.55%), Postives = 69/91 (75.82%), Query Frame = -3
Query:  303 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQ-RSGGAPGAG 572
            K+K+DA+N+LE Y YNM+N I D +K+ +KL  D+K KIE +++ A+EWL+ NQ AE +++E+K+KE+E++CNPII  +YQ    G P AG
Sbjct:  539 KKKVDAKNALENYAYNMRNTIRD-EKIGEKLAGDDKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQGGEAGGPAAG 628          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.751e-21
Identity = 46/91 (50.55%), Postives = 72/91 (79.12%), Query Frame = -3
Query:  306 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGA 578
            ++K+K++A+N+LE Y YNM+N I D DK+  +L + +K +IE A+ EA++WLD+NQ AE +++E+K+KE+E++CNPII  +YQ  GGA GA
Sbjct:  537 ELKKKVEAKNALENYAYNMRNTIKD-DKINSQLSAADKKRIEDAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQ--GGAGGA 624          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 42/88 (47.73%), Postives = 70/88 (79.55%), Query Frame = -3
Query:  309 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 572
            K+K++A+N+LE Y YNM+N I D +K+ +KL + +K KIE ++++A++WL+ NQ AE +++E+K+KE+E++CNPII  +YQ +GG  G
Sbjct:  539 KKKVEAKNALENYAYNMRNTIQD-EKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGEAG 625          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.593e-21
Identity = 45/88 (51.14%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  309 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 572
            K++I A+N+LE+Y +NMK  I D +KL DK+  ++K KI+    E + WLD NQ+AEK+++E + KE+E+VCNPIIT +YQ +GG PG
Sbjct:  532 KDRIAAKNALESYAFNMKQTIED-EKLKDKISEEDKKKIQEKCDETVRWLDGNQTAEKDEFEHRQKELESVCNPIITKLYQSAGGMPG 618          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.128e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL  ++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  SGG P  G E
Sbjct:  554 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSPEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSGGPPPTGEE 646          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 42/90 (46.67%), Postives = 67/90 (74.44%), Query Frame = -3
Query:  303 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAG 572
            K+K++A+N+LE Y YNM+N I D +K+ +KL + +K K+E +++EA++WLD NQ  E +++E+K+KE+E+VCNPII  +YQ   G    G
Sbjct:  539 KKKVEAKNALENYAYNMRNTIRD-EKIGEKLPAADKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQGGAGGEAGG 627          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  S G P  G E
Sbjct:  554 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSAGPPPTGEE 646          
The following BLAST results are available for this feature:
BLAST of CN186680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
GRP78_CHICK9.454e-2252.1378 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_XENLA1.613e-2148.9478 kDa glucose-regulated protein OS=Xenopus laevis... [more]
GRP78_MOUSE1.613e-2151.0678 kDa glucose-regulated protein OS=Mus musculus G... [more]
HSP73_ARATH2.106e-2150.55Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP7C_PETHY2.751e-2150.55Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP71_ARATH3.593e-2147.73Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP70_BRUMA3.593e-2151.14Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
GRP78_RAT6.128e-2150.0078 kDa glucose-regulated protein OS=Rattus norvegi... [more]
HSP72_ARATH8.004e-2146.67Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
GRP78_PONAB8.004e-2150.0078 kDa glucose-regulated protein OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186680 ID=CN186680; Name=CN186680; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAACGTTCATTAGTATTGAAG
GAAACACTAGTAATGAAATAAGAAAAGATCCTTTAAAGTATCTTCACATC
CAAAAAAACACGCGAAGAAAGGGAAATTCCGCCTCCCTTTTACTTCTCCT
ACCACGAGAAAAATTACAGTAAGTACCCTCAGATAATCTAAAAAGCCTAT
TTTACTCAATTTTAGCCTCTTGACAGTTTTGGCAATATGGTCAATCGAAG
TAAAAATTCTTTAGAGCTCATCGTGTGAATCATCATCATCCGATGATTCA
GTGCCAGCACCGGGGGCTCCGCCAGATCTCTGATATACAGCAGTGATGAT
GGGGTTGCAAACGGCTTCAACCTCCTTGAGCTTCTCTTCATAGTCCTCTT
TCTCTGCGCTCTGGTTGTCATCGAGCCATTCAAGGGCTTCCTTTACAGCA
GTTTCAATCTTGTCCTTCTCATCAGATTCGAGCTTGTCGGCAAGCTTGTC
CTTGTCATTAATCTGGTTTTTCATGTTATAGACATAGGTCTCAAGGCTGT
TGCGAGCATCGATCTTCTCCTTTACTTTCT
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