CN186680

Overview
NameCN186680
Unique NameCN186680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  S G P  G E
Sbjct:  554 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSAGPPPTGEE 646          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.004e-21
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  S G P  G E
Sbjct:  554 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSAGPPPTGEE 646          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.045e-20
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            K+KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  +G  P +  E
Sbjct:  555 KLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLYGSAGPPPTSEEE 648          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 42/92 (45.65%), Postives = 68/92 (73.91%), Query Frame = -3
Query:  297 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 572
            K+K++++N+LE Y YNM+N + D +K+  KL   +K KIE A+  +++WLD NQ AE +++++K+KE+E++CNPII  +YQ +GG  G G E
Sbjct:  539 KKKVESKNALENYAYNMRNIVKD-EKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQGAGGDMGGGME 629          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.783e-20
Identity = 46/94 (48.94%), Postives = 68/94 (72.34%), Query Frame = -3
Query:  297 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 578
            ++KE+ID RN LE+Y Y++KNQI DK+KL  KL S++K+ +E AV+E +EWL+ +Q A+ ED++ K KE+E +  PII+ +Y  S G P  G E
Sbjct:  554 RLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAVEEKIEWLESHQDADIEDFKAKKKELEEIVQPIISKLY-GSAGPPPTGEE 646          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7D_MANSE (Heat shock 70 kDa protein cognate 4 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.041e-20
Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K KE I A+N+LE+Y +NMK+ + D +KL DK+   +K  I     + ++WLD NQ A+KE+YE K KE+E +CNPIIT +YQ +GG PG
Sbjct:  531 KQKETIQAKNALESYCFNMKSTMED-EKLKDKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKLYQGAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
The following BLAST results are available for this feature:
BLAST of CN186680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
GRP78_MESAU8.004e-2150.0078 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN8.004e-2150.0078 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN1.045e-2047.8778 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
HSP7E_SPIOL1.783e-2045.65Chloroplast envelope membrane 70 kDa heat shock-re... [more]
GRP78_SPETR1.783e-2048.9478 kDa glucose-regulated protein OS=Spermophilus t... [more]
HSP7D_MANSE3.041e-2050.00Heat shock 70 kDa protein cognate 4 OS=Manduca sex... [more]
HSP7C_SAGOE3.972e-2048.89Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT3.972e-2048.89Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB3.972e-2048.89Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_MOUSE3.972e-2048.89Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186680 ID=CN186680; Name=CN186680; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAACGTTCATTAGTATTGAAG
GAAACACTAGTAATGAAATAAGAAAAGATCCTTTAAAGTATCTTCACATC
CAAAAAAACACGCGAAGAAAGGGAAATTCCGCCTCCCTTTTACTTCTCCT
ACCACGAGAAAAATTACAGTAAGTACCCTCAGATAATCTAAAAAGCCTAT
TTTACTCAATTTTAGCCTCTTGACAGTTTTGGCAATATGGTCAATCGAAG
TAAAAATTCTTTAGAGCTCATCGTGTGAATCATCATCATCCGATGATTCA
GTGCCAGCACCGGGGGCTCCGCCAGATCTCTGATATACAGCAGTGATGAT
GGGGTTGCAAACGGCTTCAACCTCCTTGAGCTTCTCTTCATAGTCCTCTT
TCTCTGCGCTCTGGTTGTCATCGAGCCATTCAAGGGCTTCCTTTACAGCA
GTTTCAATCTTGTCCTTCTCATCAGATTCGAGCTTGTCGGCAAGCTTGTC
CTTGTCATTAATCTGGTTTTTCATGTTATAGACATAGGTCTCAAGGCTGT
TGCGAGCATCGATCTTCTCCTTTACTTTCT
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