CN186680

Overview
NameCN186680
Unique NameCN186680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = -3
Query:  309 KVKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 578
            K ++K+ ++NSLE+Y +NMK  + D +KL  K+  ++K KI     E + WLD NQ+AEKE++E + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 KQRDKVSSKNSLESYAFNMKATVED-EKLQGKINDEDKQKILDKCNEIINWLDKNQTAEKEEFEHQQKELEKVCNPIITKLYQSAGGMPG 619          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 3.972e-20
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = -3
Query:  297 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPGAGTE 572
            ++K+ ++NSLE+Y +NMK+ + D +KL  K+  ++K KI     E + WLD NQ+AEKE+YE   KE+E VCNPIIT +YQ +GG PG   E
Sbjct:  533 RDKVSSKNSLESYAFNMKSTVED-EKLQGKISDEDKTKILEKCNEVIGWLDKNQTAEKEEYEHHQKELEKVCNPIITKLYQGAGGMPGGMPE 623          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20
Identity = 44/86 (51.16%), Postives = 64/86 (74.42%), Query Frame = -3
Query:  309 KIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 566
            +I +RN+LE+Y YN++N + D +KLADK ++ +K K+E AV   + WLD++Q A KE+YEE  KE+EAV NPI+  +Y  +GGAPG
Sbjct:  533 RITSRNALESYAYNLRNSLTD-EKLADKFDAADKKKLEDAVNSTISWLDNSQEASKEEYEEHQKELEAVANPIMQKLYAGAGGAPG 617          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP70_HYDMA (Heat shock 70 kDa protein OS=Hydra magnipapillata GN=HSP70.1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.188e-20
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = -3
Query:  309 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 572
            ++K+ A+NSLE+Y YNMK  + D +K+  K+  ++K  I     E +EW+D NQ+AEK+ YE K KE+E VCNPIIT +YQ  GG PG
Sbjct:  540 RDKVQAKNSLESYCYNMKQTVED-EKVKGKISEEDKKTIIKKCNETVEWVDKNQTAEKDQYEHKQKELEKVCNPIITKLYQAGGGMPG 626          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFA (78 kDa glucose-regulated protein homolog (Fragment) OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.775e-20
Identity = 41/86 (47.67%), Postives = 68/86 (79.07%), Query Frame = -3
Query:  318 VKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 575
            ++EK++A+N+L+ Y+ +MK  + DKDKLADK+E ++K+ I +AVK+A +WL++N +A+ E  ++KLK++EAVC PII  +Y + GG
Sbjct:  178 LREKVEAKNNLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYGQPGG 263          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: GRP78_PLAFO (78 kDa glucose-regulated protein homolog OS=Plasmodium falciparum (isolate NF54) PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.849e-20
Identity = 41/86 (47.67%), Postives = 67/86 (77.91%), Query Frame = -3
Query:  318 VKEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGG 575
            ++EK++A+N L+ Y+ +MK  + DKDKLADK+E ++K+ I +AVK+A +WL++N +A+ E  ++KLK++EAVC PII  +Y + GG
Sbjct:  554 LREKVEAKNKLDNYIQSMKATVEDKDKLADKIEKEDKNTILSAVKDAEDWLNNNSNADSEALKQKLKDLEAVCQPIIVKLYGQPGG 639          
BLAST of CN186680 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.156e-19
Identity = 42/88 (47.73%), Postives = 63/88 (71.59%), Query Frame = -3
Query:  309 KEKIDARNSLETYVYNMKNQINDKDKLADKLESDEKDKIETAVKEALEWLDDNQSAEKEDYEEKLKEVEAVCNPIITAVYQRSGGAPG 572
            ++K+ A+N LE+Y +NMK+ + D +KLA K+  ++K KI     E + WLD NQ+AE+++Y  + KE+E VCNPIIT +YQ +GG PG
Sbjct:  531 RDKVSAKNGLESYAFNMKSTVED-EKLAGKISDEDKQKILDKCNEVISWLDKNQTAERDEYVHQQKELEKVCNPIITKLYQSAGGMPG 617          
The following BLAST results are available for this feature:
BLAST of CN186680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
HSP7C_HUMAN3.972e-2048.89Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE3.972e-2048.89Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_CRIGR3.972e-2048.89Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_BOVIN3.972e-2048.89Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HSP70_ONCMY3.972e-2048.91Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HSP71_PUCGR5.188e-2051.16Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP70_HYDMA5.188e-2050.00Heat shock 70 kDa protein OS=Hydra magnipapillata ... [more]
GRP78_PLAFA6.775e-2047.6778 kDa glucose-regulated protein homolog (Fragment... [more]
GRP78_PLAFO8.849e-2047.6778 kDa glucose-regulated protein homolog OS=Plasmo... [more]
HSP7C_ORYLA1.156e-1947.73Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186680 ID=CN186680; Name=CN186680; organism=Citrus sinensis; type=EST; length=580bp
TTTTTTTTTTTTTTTTTTTTTTTTTTGAAGAACGTTCATTAGTATTGAAG
GAAACACTAGTAATGAAATAAGAAAAGATCCTTTAAAGTATCTTCACATC
CAAAAAAACACGCGAAGAAAGGGAAATTCCGCCTCCCTTTTACTTCTCCT
ACCACGAGAAAAATTACAGTAAGTACCCTCAGATAATCTAAAAAGCCTAT
TTTACTCAATTTTAGCCTCTTGACAGTTTTGGCAATATGGTCAATCGAAG
TAAAAATTCTTTAGAGCTCATCGTGTGAATCATCATCATCCGATGATTCA
GTGCCAGCACCGGGGGCTCCGCCAGATCTCTGATATACAGCAGTGATGAT
GGGGTTGCAAACGGCTTCAACCTCCTTGAGCTTCTCTTCATAGTCCTCTT
TCTCTGCGCTCTGGTTGTCATCGAGCCATTCAAGGGCTTCCTTTACAGCA
GTTTCAATCTTGTCCTTCTCATCAGATTCGAGCTTGTCGGCAAGCTTGTC
CTTGTCATTAATCTGGTTTTTCATGTTATAGACATAGGTCTCAAGGCTGT
TGCGAGCATCGATCTTCTCCTTTACTTTCT
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