CN186662

Overview
NameCN186662
Unique NameCN186662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2558 contig Csv1_Contig2558:1..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.334e-36
Identity = 71/110 (64.55%), Postives = 85/110 (77.27%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELSLSHT 584
            VDLVDV++G EYELV+TTY+GLYRYRVGD+LRV GF N AP F FVRR+NV LS+D+DKTDE EL  A+  A + L  F  S+ EYTSYA+  TIPGHYV++WEL    T
Sbjct:  389 VDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNKAPMFSFVRRQNVALSVDSDKTDETELHAAVSGAVQHLAPFGASLVEYTSYADAATIPGHYVLFWELRAGST 498          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.578e-36
Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANT-KTIPGHYVIYWEL 569
            VDLVDV++G EYELV+TTY+GLYRYRVGD+LRV GF N+AP F FVRRKNV LSID+DKTDEAEL  A+  A + L  F  S+ EYTSYA+T  TIPGHYV++WEL
Sbjct:  397 VDLVDVKLGHEYELVVTTYSGLYRYRVGDVLRVAGFKNAAPMFAFVRRKNVALSIDSDKTDEAELHAAVTEAVQHLAPFGASLVEYTSYADTATTIPGHYVLFWEL 502          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.171e-33
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNA--SRLLREFNTSVGEYTSYANTKTIPGHYVIYWELSLSHT 584
            V+LV+VEVG+ YE+VITT+ GLYRYRVGDIL+VTGFHN APQF FV+R+NV+LSID DKT E +L NA+  A  + L    +  + EYTSYA+T +IPGHYV++WEL   H+
Sbjct:  394 VNLVNVEVGQYYEIVITTFTGLYRYRVGDILKVTGFHNKAPQFRFVQRRNVVLSIDTDKTSEEDLLNAVTQAKLNHLQHPSSLLLTEYTSYADTSSIPGHYVLFWELKPRHS 505          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 63/112 (56.25%), Postives = 88/112 (78.57%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELSLSHTRK 590
            V LVDV+VG  YELV+TT++GLYRYRVGD+L+VTGF+N APQF F+ R+NV+LSID+DKT+E +L N++  A ++L   N  + EYTSY +  T+PGHYV++WE+  +H  +
Sbjct:  383 VSLVDVKVGCYYELVVTTFSGLYRYRVGDVLQVTGFYNRAPQFKFICRRNVILSIDSDKTNEEDLHNSVTTAKKILENQNYLLLEYTSYTDISTVPGHYVLFWEIKSTHDER 494          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 61/105 (58.10%), Postives = 85/105 (80.95%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWEL 569
            VDLV+V++G+ YELV+TT+AGLYRYR+GD+L+V GF+N APQF F+ R+NV+LSID DKT+E +L  +I  A + L   N  + EYTSYA+T ++PGHYV++WE+
Sbjct:  384 VDLVNVKLGRYYELVVTTFAGLYRYRIGDVLQVAGFYNGAPQFRFICRRNVVLSIDLDKTNEEDLHRSITLAKKKLGS-NAFLAEYTSYADTSSVPGHYVLFWEI 487          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH310_ORYSJ (Putative indole-3-acetic acid-amido synthetase GH3.10 OS=Oryza sativa subsp. japonica GN=GH3.10 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.277e-31
Identity = 70/113 (61.95%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  246 SQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNA-SRLLREFNTSVGEYTSYANTKTIPGHY---VIYWELS 572
            S  V+L  VE G+EYE+V+TTYAGL RYRVGD+L VTGFHN+APQF FVRR++VLLSI+ADKTDEAELQ A++ A S LLR    S+ EYTS A T+ +PGH+   + +W L+
Sbjct:  365 SNLVELARVEDGREYEVVVTTYAGLNRYRVGDVLCVTGFHNAAPQFRFVRRQSVLLSIEADKTDEAELQRAVERASSALLRPRGASIVEYTSRACTERVPGHFSPALPHWTLA 477          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 66/170 (38.82%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  243 KSQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLLREFNTSVGEYTSYANTKTIPGHYVIYWELS-----------------------LSHTRKISFV*PLLENLIRVWLQEMIFDDFGSVNGAI 683
            +S PV L +VEVGK YE+VIT +AGLYRYR+GD++++  FHNS P+  F+ R++++LSI+ DK  E +LQ A++ AS+ L      V ++TS+    + PG YVI+WELS                        + +RKI  + PL   ++R    + I D F S+ GA+
Sbjct:  377 ESDPVGLTEVEVGKIYEVVITNFAGLYRYRLGDVVKIARFHNSTPELQFICRRSLVLSINIDKNTEKDLQLAVEEASKFLEGEKLEVMDFTSFVERSSDPGRYVIFWELSGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAV 546          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH312_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.12 OS=Oryza sativa subsp. japonica GN=GH3.12 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.223e-27
Identity = 53/114 (46.49%), Postives = 84/114 (73.68%), Query Frame = 3
Query:  246 SQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRLL-----REFNTSVGEYTSYANTKTIPGHYVIYWELS 572
            + PV L DV VG+ YE+V+TT+ GLYRYR+GD+++V GFH++ P+  FV R++++LSI+ DK  E +LQ A+D+A+++L           + +YTS+A+T + PGHYV++WEL+
Sbjct:  400 ANPVGLTDVVVGEHYEVVMTTFTGLYRYRLGDVVKVAGFHHATPKLRFVCRRSLILSINVDKNSEHDLQLAVDSAAKILAGDGENHKQLEIADYTSHADTSSDPGHYVVFWELN 513          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 2.365e-26
Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 3
Query:  255 VDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDADKTDEAELQNAIDNASRL-LREFNTSVGEYTSYANTKTIPGHYVIYWELS 572
            VDLVDV+VG+ YEL++TT+AGLYRYRVGD+  V+GF+N+ P FHF  R +V+LSID +K  E +L NAI    +  LR     +   T+YA+  T+PGHY+++WEL+
Sbjct:  405 VDLVDVKVGRCYELIVTTFAGLYRYRVGDLFTVSGFYNATPLFHFSGRHDVILSIDYEKISEEDLLNAIAETDKFHLRPLGYMLVGSTAYADISTLPGHYILFWELT 511          
BLAST of CN186662 vs. ExPASy Swiss-Prot
Match: GH36_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.139e-12
Identity = 30/54 (55.56%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  237 SAKSQPVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRR 398
            +A ++PVD+  VE GK YELV TT+ GLYRY+VGD++++ GFH+S+P+  FV R
Sbjct:  215 AAAAEPVDIAGVEAGKTYELVATTFRGLYRYKVGDVVKIAGFHHSSPRLQFVTR 268          
The following BLAST results are available for this feature:
BLAST of CN186662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GH31_ORYSJ7.334e-3664.55Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ORYSJ9.578e-3669.81Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH1.171e-3361.61Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH311_ORYSJ1.529e-3356.25Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ARATH3.188e-3158.10Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH310_ORYSJ9.277e-3161.95Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ORYSJ9.600e-2838.82Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH312_ORYSJ6.223e-2746.49Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH37_ORYSJ2.365e-2652.34Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ORYSJ1.139e-1255.56Probable indole-3-acetic acid-amido synthetase GH3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003E04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186662 ID=CN186662; Name=CN186662; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTGATTACACAGTCACGATTCTTTCTTCTTACCTAT
ATAACCGATTCTAAAATTCTACTTCGGCGAAAGTATACATTGCATCTCAA
CAATAATCTAAAAGGAAAAAGCTATTTCCCCCGATTTTAAACCCCGAATT
GCACCCCGAATTGAAACGCGCCGTTTTGGCAAATAAATAACGCACCGTTT
AACTTTGCGTTTAACCTTTGCTTTTGATGATCTCTTTCTGCAAAATCGCA
GCCTGTTGACCTTGTCGATGTCGAAGTGGGCAAAGAATACGAGCTTGTGA
TCACAACTTACGCCGGCTTGTACAGATACCGAGTCGGGGACATCCTCCGA
GTGACCGGGTTCCACAACTCAGCCCCGCAGTTCCATTTCGTCAGAAGAAA
GAACGTCTTACTCAGTATTGACGCCGACAAAACCGACGAGGCCGAACTGC
AGAACGCCATCGACAACGCTTCTCGACTGCTCCGAGAATTCAACACCAGC
GTCGGGGAATACACAAGCTATGCGAATACAAAGACAATCCCAGGTCACTA
CGTGATATACTGGGAACTCAGTCTCTCACACACCCGCAAAATCTCTTTCG
TTTAACCTTTGCTAGAGAATTTGATCCGAGTTTGGTTGCAAGAGATGATT
TTTGATGATTTTGGTTCTGTGAATGGCGCGATCCATCCT
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