CX675091

Overview
NameCX675091
Unique NameCX675091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length485
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_ARGMO (60S ribosomal protein L38 OS=Argas monolakensis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.180e-22
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQ+ EIKDFLLTARRKDA+SV+IK++ D V KFKVRCSKYLYT+ V + +KA+KLKQSLPPGL V++L
Sbjct:    1 MPKQLKEIKDFLLTARRKDAKSVRIKKNPDNVTKFKVRCSKYLYTIVVKEKEKAEKLKQSLPPGLQVKEL 70          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.395e-21
Identity = 47/69 (68.12%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I EIKDFL+TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKEIKDFLVTARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_JULON (60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.822e-21
Identity = 48/69 (69.57%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I EIKDFLL ARRKDA+SVKIK++ D VKFKVRCS++LYTL + D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPREITEIKDFLLKARRKDAKSVKIKKNPDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_SPOFR (60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.925e-21
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I +IKDFLL ARRKDA+SVKIK+++  VKFKVRCS++LYTL + D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNQQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_PLUXY (60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.044e-21
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I +IKDFLL ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_ARTSF (60S ribosomal protein L38 OS=Artemia sanfranciscana GN=RPL38 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.181e-20
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPKQ+ EIKDFL+ ARRKDA+S KIK++ D  KFK+RCS++LYTL + DS+KA+KLK+SLPPGL V++L
Sbjct:    1 MPKQLMEIKDFLIKARRKDAKSCKIKKNPDNTKFKLRCSRFLYTLVITDSEKAEKLKKSLPPGLQVKEL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_AEDAE (60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.181e-20
Identity = 45/69 (65.22%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I E+KDFL+ ARRKDAR+VKIK++ +  KFK+RCS+YLYTL V D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPQEIKEVKDFLIKARRKDARAVKIKKNENNTKFKIRCSRYLYTLVVQDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_CAEEL (60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.543e-20
Identity = 47/69 (68.12%), Postives = 58/69 (84.06%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MPK+I EIKDFL+ ARRKDA+SVKIK++ +  KFKVRC+ YLYTL V D  KA+KLKQSLPPG+ V++L
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKEL 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_BOMMO (60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.543e-20
Identity = 45/69 (65.22%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP++I +IKDFL+ ARRKDA+SVKIK++ + VKFKVRCS++LYTL + D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of CX675091 vs. ExPASy Swiss-Prot
Match: RL38_TIMBA (60S ribosomal protein L38 OS=Timarcha balearica GN=RpL38 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.015e-20
Identity = 45/69 (65.22%), Postives = 61/69 (88.41%), Query Frame = 3
Query:   69 MPKQIHEIKDFLLTARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSKKADKLKQSLPPGLSVQDL 275
            MP+++ EIK+FLLTARRKDA+SVKIK++ +  KFKVRCS++LYTL + D +KA+KLKQSLPPGL V+++
Sbjct:    1 MPRELTEIKEFLLTARRKDAKSVKIKKNPENTKFKVRCSRFLYTLVITDREKAEKLKQSLPPGLQVKEV 69          
The following BLAST results are available for this feature:
BLAST of CX675091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_ARGMO8.180e-2272.8660S ribosomal protein L38 OS=Argas monolakensis GN... [more]
RL38_LYSTE1.395e-2168.1260S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]
RL38_JULON1.822e-2169.5760S ribosomal protein L38 OS=Julodis onopordi GN=R... [more]
RL38_SPOFR6.925e-2166.6760S ribosomal protein L38 OS=Spodoptera frugiperda... [more]
RL38_PLUXY9.044e-2166.6760S ribosomal protein L38 OS=Plutella xylostella G... [more]
RL38_ARTSF1.181e-2066.6760S ribosomal protein L38 OS=Artemia sanfranciscan... [more]
RL38_AEDAE1.181e-2065.2260S ribosomal protein L38 OS=Aedes aegypti GN=RpL3... [more]
RL38_CAEEL1.543e-2068.1260S ribosomal protein L38 OS=Caenorhabditis elegan... [more]
RL38_BOMMO1.543e-2065.2260S ribosomal protein L38 OS=Bombyx mori GN=RpL38 ... [more]
RL38_TIMBA2.015e-2065.2260S ribosomal protein L38 OS=Timarcha balearica GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59F12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59F12-K23-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675091 ID=CX675091; Name=CX675091; organism=Citrus sinensis; type=EST; length=485bp
CTTAGCTCTAGGGCTTGGGGGCGTGCTTAAATTCGAAAACTCGAGTGGAA
CAAAAACCTCGACCGAGAATGCCTAAGCAGATACACGAGATCAAGGATTT
CCTTCTTACCGCCAGAAGGAAGGATGCACGCTCTGTGAAAATCAAGAGAA
GCAGAGATGTTGTCAAGTTCAAGGTTCGCTGCTCTAAGTACCTTTACACC
CTTTGTGTGTTCGACTCAAAGAAGGCTGACAAGTTGAAGCAGTCTCTTCC
TCCAGGTTTGAGCGTCCAAGACCTGTGAGTGTATGCGAGCTTGTCTTAAT
TTACTAGGTGATGAGAGCTGCTTTTTTACATTTCATGCTGTTTTCTCATA
GTAGAAATATTGTGTGGATTTGAGCGTATTTGATAATTGTTATTGTTAGA
GGATGCGGATCTTTTTGCCAGTTGATTTATGGACGTTGAAACTTGGTTTG
CACAATTGCAACTTTTTGCCTACTAAAAAAAAAAA
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