CN186652

Overview
NameCN186652
Unique NameCN186652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_BOVIN (60S ribosomal protein L7a OS=Bos taurus GN=RPL7A PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA APA   K + +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQFT+ LD+  A+ L KL
Sbjct:    8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_ICTPU (60S ribosomal protein L7a OS=Ictalurus punctatus GN=rpl7a PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.650e-18
Identity = 47/91 (51.65%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA AP+   K++ +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQF + LD+  A+ LFKL
Sbjct:    8 KGKKVAPAPSVAKKHEVKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRHGSILYKRLKVPPAINQFNQALDRQTATQLFKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_CHICK (60S ribosomal protein L7a OS=Gallus gallus GN=RPL7A PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  383 RGGKVAAAPA---KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            +G KVA APA   K + +KVVNPLFEKRPK FGIG  + PK+DL R+VKWP+               KVPPA+NQF++ LD+  A+ L KL
Sbjct:    8 KGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFSQALDRQTATQLLKL 98          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = -1
Query:  142 RLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPVRCYG 336
            +LARE+ME +Q  +   RKIVTEILPA +FYRAE YHQQYL KGG  G  QSAEKGC++P+RCYG
Sbjct:  195 KLAREAMEKQQKILN--RKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = -1
Query:  142 RLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPVRCYG 336
            R+ARE++E +Q  +   ++IVTEILPA +FYRAE YHQQYL KGG  G +QSAEKGC +P+RCYG
Sbjct:  196 RIAREAVEKQQKILN--KRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.996e-17
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = -1
Query:  142 RESMEAKQLEMKD-QRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPVRCYG 327
            + ++EAK+   K   R +VTEILPAK+FYRAEEYHQQYL KGG  G +QS EKGC++P+RCYG
Sbjct:  197 KAAIEAKERHQKKLNRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_DROME (60S ribosomal protein L7a OS=Drosophila melanogaster GN=RpL7A PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  392 KVAAAP-AKNKP--EKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKLL 649
            KVA AP A  KP  +KVVN LFEKRPK FGIG  + PK+DL R+V+WPK               KVPP ++QF++TLDK  A  LFKLL
Sbjct:   16 KVAPAPLAVKKPVVKKVVNQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLDKTTAVKLFKLL 104          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL7A_ANOGA (60S ribosomal protein L7a OS=Anopheles gambiae GN=RpL7A PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  362 RHEMAPKRGGKVAAAPA----KNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKLL 649
            + ++ PK+  KVA AP     K + +KVVNPLFEKR K +GIG  + PK+DL R+VKWPK               K+PP +NQFT+TLDK  A  + K+L
Sbjct:    8 KKKVVPKQ--KVAPAPLAKPKKVEVKKVVNPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLDKPTAQQVMKML 105          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL8_SCHPO (60S ribosomal protein L8 OS=Schizosaccharomyces pombe GN=rpl8 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 48/95 (50.53%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  371 MAPKRGGKVAAAP-AKNKPEKVV-NPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKLL 649
            MAPK   KVA +P A+ K  K   NPLF  RP+ FGIG  + PK+DL R+VKWP+               KVPPA+ QF KTLDKN A+ +FKLL
Sbjct:    1 MAPK-SKKVAPSPFAQPKAAKTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKNTATQVFKLL 94          
BLAST of CN186652 vs. ExPASy Swiss-Prot
Match: RL8B_YEAST (60S ribosomal protein L8-B OS=Saccharomyces cerevisiae GN=RPL8B PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 44/95 (46.32%), Postives = 51/95 (53.68%), Query Frame = 2
Query:  371 MAPKRGGKVAAAP---AKNKPEKVVNPLFEKRPKQFGIGGALPPKKDLHRYVKWPKAXXXXXXXXXXXXXXKVPPALNQFTKTLDKNLASSLFKL 646
            MAP  G KVA AP      K  K  NPL    PK FGIG A+ PK++L RYVKWP+               KVPP + QF  TLD+N A+  FKL
Sbjct:    1 MAP--GKKVAPAPFGAKSTKSNKAKNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRLQRQKKILSIRLKVPPTIAQFQYTLDRNTAAETFKL 93          
The following BLAST results are available for this feature:
BLAST of CN186652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RL7A_BOVIN9.670e-1952.7560S ribosomal protein L7a OS=Bos taurus GN=RPL7A P... [more]
RL7A_ICTPU1.650e-1851.6560S ribosomal protein L7a OS=Ictalurus punctatus G... [more]
RL7A_CHICK2.814e-1851.6560S ribosomal protein L7a OS=Gallus gallus GN=RPL7... [more]
MSRA_BRANA3.710e-1867.69Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH4.102e-1763.08Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_LACSA6.996e-1763.49Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
RL7A_DROME1.544e-1653.9360S ribosomal protein L7a OS=Drosophila melanogast... [more]
RL7A_ANOGA5.867e-1646.0060S ribosomal protein L7a OS=Anopheles gambiae GN=... [more]
RL8_SCHPO1.707e-1550.5360S ribosomal protein L8 OS=Schizosaccharomyces po... [more]
RL8B_YEAST1.598e-1346.3260S ribosomal protein L8-B OS=Saccharomyces cerevi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003D23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186652 ID=CN186652; Name=CN186652; organism=Citrus sinensis; type=EST; length=654bp
TTTTTTTTTATTTTTACACAAAGCAACGCACATTTTATACCATTATAATC
AAAGCAAGCTTAACAAGAGTTCGCTTTTCCCCTTTAAGAAACGTAGATAT
GATAATAAACAAGGTTCAAGCTATAAAAAGGTCAAACGTCAACCGTAGCA
TCTGACGGGCTCATCGCAGCCCTTTTCAGCAGACTGCTTGGAGCCTCTGC
CACCACCCTTTTCAAGATACTGCTGATGGTACTCCTCGGCTCTGTAAAAT
CTCTTCGCAGGAAGAATCTCTGTTACAATCTTCCTCTGATCCTTCATCTC
CAACTGCTTTGCTTCCATTGACTCTCGGGCTAAACGAGAAAACCACAGAG
CCTAGCAGAAGCGGCACGAAATGGCTCCGAAGAGAGGAGGAAAGGTTGCT
GCTGCACCGGCAAAGAATAAGCCGGAGAAGGTTGTGAATCCACTGTTTGA
GAAGCGTCCGAAGCAGTTTGGTATCGGTGGGGCTCTGCCGCCGAAGAAGG
ATCTTCACCGTTATGTGAAGTGGCCCAAGGCTATTCGTATTCAGAGGCAG
AGGAGGATCCTCAGGCAGAGGTTGAAGGTTCCACCTGCTTTGAACCAATT
CACCAAGACTTTGGACAAGAATCTTGCCTCAAGTCTTTTCAAGTTGCTCC
TTCA
back to top