CN186651

Overview
NameCN186651
Unique NameCN186651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9833 contig Csv1_Contig9833:504..1289. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_PSESM (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas syringae pv. tomato GN=clpP PE=3 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.054e-47
Identity = 89/135 (65.93%), Postives = 111/135 (82.22%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+ G +GKR+ LPNSR+MIHQPLGG QG  SDID+ A E+LH +  LN  L++HTGQ+LE I  DT+RD FMSAE A +YGLID VI
Sbjct:   72 PDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVI 206          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_PSE14 (ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.054e-47
Identity = 89/135 (65.93%), Postives = 111/135 (82.22%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+ G +GKR+ LPNSR+MIHQPLGG QG  SDID+ A E+LH +  LN  L++HTGQ+LE I  DT+RD FMSAE A +YGLID VI
Sbjct:   72 PDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAGGAEGKRHCLPNSRMMIHQPLGGFQGQASDIDIHAKEILHIRHRLNSLLAHHTGQSLETIERDTERDNFMSAERAAEYGLIDSVI 206          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_CARHZ (ATP-dependent Clp protease proteolytic subunit OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.054e-47
Identity = 90/135 (66.67%), Postives = 111/135 (82.22%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P KDI +Y+NSPGG +TAGMAI+DT+++I+PDVST+C+G AASMGAFLL+AG KGKR+SLP +RIMIHQPLGG QG  +DID+ A E+L  +  LN  L+ HTGQ  EKI  DT+RDFFMSA EAK+YG+ID VI
Sbjct:   57 PEKDIHLYINSPGGVITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQGQATDIDIHAREILRMRDMLNELLTKHTGQPKEKIERDTERDFFMSAAEAKEYGIIDEVI 191          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.988e-47
Identity = 88/135 (65.19%), Postives = 113/135 (83.70%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P+KD+ +Y+NSPGGSVTAG+AI+DT+++I+ DVST+CVG AASM A LL+AG KGKRY+LPN+RIMIHQPLGGA+G   D+++   E+L  K  LN  LS HTGQ +EKI +DTDRDFFMSAEEAK+YG++D V+
Sbjct:   65 PDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.988e-47
Identity = 88/135 (65.19%), Postives = 113/135 (83.70%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P+KD+ +Y+NSPGGSVTAG+AI+DT+++I+ DVST+CVG AASM A LL+AG KGKRY+LPN+RIMIHQPLGGA+G   D+++   E+L  K  LN  LS HTGQ +EKI +DTDRDFFMSAEEAK+YG++D V+
Sbjct:   65 PDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.988e-47
Identity = 88/135 (65.19%), Postives = 113/135 (83.70%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P+KD+ +Y+NSPGGSVTAG+AI+DT+++I+ DVST+CVG AASM A LL+AG KGKRY+LPN+RIMIHQPLGGA+G   D+++   E+L  K  LN  LS HTGQ +EKI +DTDRDFFMSAEEAK+YG++D V+
Sbjct:   65 PDKDVYLYINSPGGSVTAGLAIYDTMQYIKCDVSTICVGQAASMAAVLLAAGAKGKRYALPNARIMIHQPLGGAEGPAKDVEIITRELLRIKDLLNRILSKHTGQPIEKIEKDTDRDFFMSAEEAKEYGIVDKVV 199          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_PSEHT (ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=clpP PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.988e-47
Identity = 89/137 (64.96%), Postives = 111/137 (81.02%), Query Frame = -2
Query:  376 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVIMN 786
            P+KDI +Y+NSPGGSVTAGMAI+DT+  I+PDVST+CVG AASMGAFLL+AG KGKR+ LPNSR+MIHQPLGG QG  SD ++ A E+L  K  LN  ++ HTGQ L+ I++DTDRD FMSA++A DYG++D V  N
Sbjct:   65 PDKDIFLYINSPGGSVTAGMAIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGFQGQASDFEIHAKEILSIKDKLNRLMAEHTGQPLDVISKDTDRDNFMSADQAVDYGIVDSVFKN 201          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_SULDN (ATP-dependent Clp protease proteolytic subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.209e-47
Identity = 89/140 (63.57%), Postives = 114/140 (81.43%), Query Frame = -2
Query:  367 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVIMNPHK 786
            P KDI  Y+NSPGG VTAGMAI+DT+ +IRPDV+T+CVG AASMGAFLLS+G KGKRY+LP++RIMIHQPLGGAQG  +DI +QA E+L  K  LN  L+ +  Q+++K+ +DTDRD FMSAEE+K+YG+ID V++   K
Sbjct:   56 PEKDIYFYINSPGGVVTAGMAIYDTMNYIRPDVATICVGQAASMGAFLLSSGAKGKRYALPHARIMIHQPLGGAQGQATDIAIQAKEILRMKEELNAILAKNCSQSIKKVEKDTDRDNFMSAEESKEYGMIDEVLLKKSK 195          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_LEPCP (ATP-dependent Clp protease proteolytic subunit OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.209e-47
Identity = 90/135 (66.67%), Postives = 114/135 (84.44%), Query Frame = -2
Query:  382 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVI 786
            P+KDI  Y+NSPGGSV+AGM+I+DT++ I+P VST+C+GLAASMGAFLL+AG KGKR+SLPNS+IMIHQPLGGAQG  +DI++ A E+L  +  LN  L+  TGQ+LEKI  DT+RD+FMS+EEA+ YGLID VI
Sbjct:   64 PDKDISFYINSPGGSVSAGMSIYDTMQFIKPQVSTLCMGLAASMGAFLLAAGAKGKRFSLPNSKIMIHQPLGGAQGQATDIEIHAREILKTREQLNRILAERTGQSLEKIQNDTERDYFMSSEEAQTYGLIDQVI 198          
BLAST of CN186651 vs. ExPASy Swiss-Prot
Match: CLPP_STAAW (ATP-dependent Clp protease proteolytic subunit OS=Staphylococcus aureus (strain MW2) GN=clpP PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.803e-47
Identity = 86/134 (64.18%), Postives = 114/134 (85.07%), Query Frame = -2
Query:  379 KDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQSDIDLQANEMLHHKANLNGYLSYHTGQTLEKINEDTDRDFFMSAEEAKDYGLIDGVIM 780
            KDI +Y+NSPGGSVTAG AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGKR++LPN+ +MIHQPLGGAQG  ++I++ AN +L  +  LN  LS  TGQ++EKI +DTDRD F++AEEAK+YGLID V++
Sbjct:   58 KDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMV 191          
The following BLAST results are available for this feature:
BLAST of CN186651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPP_PSESM3.054e-4765.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSE143.054e-4765.93ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CARHZ3.054e-4766.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THESQ3.988e-4765.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP13.988e-4765.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA3.988e-4765.19ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEHT3.988e-4764.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_SULDN5.209e-4763.57ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_LEPCP5.209e-4766.67ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_STAAW6.803e-4764.18ATP-dependent Clp protease proteolytic subunit OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003D22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186651 ID=CN186651; Name=CN186651; organism=Citrus sinensis; type=EST; length=787bp
TTTTTTTTTTTTTCATATGAAGCTTGTGTCGCCATTTCTTCATATGGTCC
CTACAACATCAAAATGGATTATATTGAGAAAATGTAATTCCATGCAATAC
ATGAATCCTAAAACTGAAATTTCCCACAATGGTTGATAATTTTGGCTTTC
CTACGGTTTTAAAAAAGCATTCAATCACCAATCTGTACATGAAACAGGCA
GTAGAGGTTTCCTGATCATTGTGTTTTAACTTTCCAACTGGACTATGTAT
CTGATAGAAATGCTAAAACTAAAACCTTTGGATGGGAAAGCTACGGTTAC
AAAGTTAAGTTGACGCACTTGGCTTGATTTTCACTGACCAGCAGCAGCTG
CTACTGGCTGCAGAATCTTGTGAGGATTCATGATGACACCATCTATAAGA
CCGTAGTCTTTAGCTTCTTCTGCACTCATGAAGAAATCGCGATCGGTGTC
CTCGTTGATCTTCTCAAGGGTTTGACCAGTATGGTAAGACAGATACCCAT
TCAAATTTGCCTTGTGATGGAGCATCTCATTTGCCTGGAGATCAATATCA
CTTTGCCCTCCTTGTGCCCCACCAAGAGGCTGATGGATCATTATCCTTGA
GTTTGGAAGACTGTATCTTTTCCCTTTGGTGCCAGCACTAAGCAGAAAAG
CCCCCATACTGGCTGCCAGTCCAACACATACAGTGGAAACATCCGGTCGT
ATGTGCCTGATTGTATCAAAAATGGCCATACCAGCCGTCACTGATCCTCC
AGGAGAGTTCAGATACATGATAATATCCTTGTTTGGA
back to top