CN186650

Overview
NameCN186650
Unique NameCN186650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYD_THEAC (Aspartyl-tRNA synthetase OS=Thermoplasma acidophilum GN=aspS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1
Query:   16 IDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            +DVK+   Y+D+F+YG PPH G+G+GLER+ M+  GLNNIR+T+L+PRD  RI P
Sbjct:  374 LDVKSFQFYVDAFKYGMPPHAGWGLGLERLTMILLGLNNIRETTLFPRDRTRIVP 428          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC1_DICDI (Aspartyl-tRNA synthetase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            G+ ++ I  YIDSF+YG   H G GVGLERVVML+ GL NIRK S  PRDP R+ P
Sbjct:  521 GVVIEDIQGYIDSFKYGCSQHAGGGVGLERVVMLYLGLGNIRKASFCPRDPTRLTP 576          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYD_THEVO (Aspartyl-tRNA synthetase OS=Thermoplasma volcanium GN=aspS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 1
Query:   16 IDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            +++ +   YI +F+YG PPH G+G+GLER+ M+  GLNNIR+T+L+PRD  RI P
Sbjct:  374 LNIDSFKFYIQAFKYGMPPHAGWGLGLERLTMIVLGLNNIRETTLFPRDRTRIIP 428          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYD_HALSA (Aspartyl-tRNA synthetase OS=Halobacterium salinarium GN=aspS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 26/56 (46.43%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   13 GIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            G++ +    Y+D+FRYG PPHGG+G+G++R++    GL+NI++  L+PRDP R+ P
Sbjct:  381 GVEPENFEFYLDAFRYGVPPHGGYGLGIDRLIQQLAGLDNIKEAILFPRDPDRLEP 436          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_ENCCU (Probable aspartyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU06_0790 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 29/60 (48.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 IQACGIDVKTISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            ++  GI   ++  Y++SF+YGAPPHGG G+GLER++  + G+ +IR  SL+PRDP R+ P
Sbjct:  414 VEEHGISPSSLGGYLESFKYGAPPHGGCGIGLERLMKAYFGMGDIRCFSLFPRDPNRLYP 473          
BLAST of CN186650 vs. ExPASy Swiss-Prot
Match: SYDC_YEAST (Aspartyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=DPS1 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   31 ISTYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLYPRDPLRIAP 180
            +  Y D F YG PPH G G+GLERVVM +  L NIR+ SL+PRDP R+ P
Sbjct:  508 LKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 557          
The following BLAST results are available for this feature:
BLAST of CN186650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SYD_THEAC4.632e-1458.18Aspartyl-tRNA synthetase OS=Thermoplasma acidophil... [more]
SYDC1_DICDI8.736e-1360.71Aspartyl-tRNA synthetase, cytoplasmic 1 OS=Dictyos... [more]
SYD_THEVO7.395e-1252.73Aspartyl-tRNA synthetase OS=Thermoplasma volcanium... [more]
SYD_HALSA9.659e-1246.43Aspartyl-tRNA synthetase OS=Halobacterium salinari... [more]
SYDC_ENCCU1.648e-1148.33Probable aspartyl-tRNA synthetase, cytoplasmic OS=... [more]
SYDC_YEAST3.670e-1158.00Aspartyl-tRNA synthetase, cytoplasmic OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003D21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186650 ID=CN186650; Name=CN186650; organism=Citrus sinensis; type=EST; length=804bp
ATTCAGGCATGTGGCATTGATGTTAAGACAATATCAACATATATTGATTC
TTTCAGATATGGTGCACCTCCTCATGGTGGATTTGGAGTGGGATTGGAGC
GTGTGGTGATGCTTTTCTGTGGTCTTAACAACATTCGTAAAACATCACTC
TACCCACGTGATCCACTTAGGATTGCCCCGTGATGATCTGCTTCAGCTAT
CAACTGCGGTTTATAGATTGCTCTATTTCTACTTTAAACTATTTTCGTAT
GAAATGATCATCTATATGCTTCACTCATTTTTGCATCCATTTTAATCCGT
GCCAATGTATAATTGTTGTTTGAGATGGTATCCATAACGTTTAATATCAG
TAACGGTATTCAGTATACTCATCAATGAGGCTTGAAATAAGTCTTTCAGA
CAAAAGGTTATATTTGTTGCATACAAAAAAAGAGATACACTTGTCTGCCT
TCGACTGAACCTTCTTAGAAAGGAAAAGCAGAGCATCAACAGTCCCCTCT
GCATAAATTGATCTACCGCAAACATTATGCTGAAATTGAAAAGAAACTCT
GATCCATATCAAAAGACACCCTTAATTTCTGAAAGCTTGAGATAACAGCT
TTGGCAGTTCCAGATGTGTCCAATTTACCAGCTTGATGGGACTCCAACAC
CTGCAAAAAATACCCAGAGAAGCCTCCAGGAATAACCAAAGCATTTTTCA
TTCATACCCAGAGGTTTCACTTGCTGCCAAGCCTTCAATCCCACAGGTTT
GTTGGACGTTTGCACACTCCAAAATCCAGTGAGACAACAATCATTCTCCC
TCCT
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