CX675079

Overview
NameCX675079
Unique NameCX675079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: FNTA_CANAL (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Candida albicans GN=RAM2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.609e-21
Identity = 62/212 (29.25%), Postives = 111/212 (52.36%), Query Frame = 3
Query:   48 EWSDVTPIPQDDGPNPVVPIAYKPEFSETMSYFRAVYYSDERSSRSFQLTKEAICLNPGNYTVWHFRRQIIETL-HTDLQDELAF-GRIAXSNSXNYQLWHHRRWVAEKLGTGAVN-----KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGWED--ELDYCQILLGEDIFNNSAWNQRYFVVTRSPLLGGLKAMRDSEVNFTIEAILGNP 656
            ++SD+TP+  +     +  I Y  ++ + M    A+  ++E S R+  +T+  I     +YT+W +R  I++ L + +L DEL +   IA  N  NYQ+W++R+ +  ++     N     +E    + MLS D KN+H WSYR+W++       D  EL +   ++  D+ NNSAW+ R+F++     L     + D E+N+  + I+  P
Sbjct:    7 DYSDITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFPILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI-DEELNYVKDKIVKCP 217          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_YEAST (Geranylgeranyl transferase type-2 subunit alpha OS=Saccharomyces cerevisiae GN=BET4 PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.456e-14
Identity = 51/175 (29.14%), Postives = 87/175 (49.71%), Query Frame = 3
Query:  174 SSRSFQLTKEAICLNPGNYTVWHFRRQIIETLHTDLQ-----DELAFGRIAXSNSXN-YQLWHHRRWVAEKLGTGAVN---KELQFTKKMLSLDAKNYHAWSYRQWVLQALGGW------EDELDYCQILLGEDIFNNSAWNQRYFVVTR---SPLLGGLKAMRDSEVNFTIEAI 644
            S  + + T E +  NP    +W++RR II +L ++L+      EL F  +   +    Y +W+HR WV +   T +      EL    K+L  DA+NYH W YR+ V+  +         ++E +Y  I +  +I N SAW+QR  +++R      +G  K    +E+++ I A+
Sbjct:   45 SIEALKKTSELLEKNPEFNAIWNYRRDIIASLASELEIPFWDKELVFVMMLLKDYPKVYWIWNHRLWVLKHYPTSSPKVWQTELAVVNKLLEQDARNYHGWHYRRIVVGNIESITNKSLDKEEFEYTTIKINNNISNYSAWHQRVQIISRMFQKGEVGNQKEYIRTEISYIINAM 219          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_DICDI (Geranylgeranyl transferase type-2 subunit alpha OS=Dictyostelium discoideum GN=rabggta PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.593e-13
Identity = 42/143 (29.37%), Postives = 76/143 (53.15%), Query Frame = 3
Query:  183 SFQLTKEAICLNPGNYTVWHFRR----QIIET-----LHTDLQDELAFGRIAXSN-SXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVLQALG-GWEDELDYCQILLGEDIFNNSAWNQRYFVVTR 578
            S  ++K  +  NP  YT+W++RR    Q  ET     L    Q+E+ F        + +Y +W HR+W+A ++      +E++   K+L+ D +N+H W +R+++L+      EDEL Y    + ++  N SAW+QR  ++ +
Sbjct:   50 SLSVSKLVLIENPEFYTIWNYRRLAILQFTETKENSELQVIYQNEMKFLEECIQRFTKSYWIWFHRQWIALRMDNCDWEREMKLCTKLLNFDLRNFHCWGHRRFILKHSNIKLEDELKYTTEKVEQNFSNYSAWHQRSSILPK 192          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_RAT (Geranylgeranyl transferase type-2 subunit alpha OS=Rattus norvegicus GN=Rabggta PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 38/135 (28.15%), Postives = 66/135 (48.89%), Query Frame = 3
Query:  189 QLTKEAICLNPGNYTVWHFRRQIIETLHTDLQDELAFGRIAXS----------NSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            +LT + +  NP   T+W+ RR++++ L T+   E +   +             N  +Y  WHHR W+  +L      +EL+   + L  D +N+H W YR++V  QA     +EL +   L+  +  N S+W+ R
Sbjct:   50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_CANAL (Geranylgeranyl transferase type-2 subunit alpha OS=Candida albicans GN=BET4 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 3
Query:  159 YSDERSSRSFQLTKEAICLNPGNYTVWHFRRQII-----------ETLHTD-LQDELAFGRIAXSNSXN-YQLWHHRRWVA-EKLGTGAVNKELQF--TKKMLSLDAKNYHAWSYRQWVLQ------------ALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            YSDE   +    T E + +NP  YT+W++RR+I+           + ++ D L  +L F  +        Y +W+HRRW+  E +  G VN + +F    K+L LD +N+H W YR++V++             L    DE +Y  + + +D  N SAW+ R
Sbjct:   45 YSDEALIK----TNELLIINPEFYTIWNYRREILINNYSSSNDKDDQIYEDILNQDLNFVLVQLKKFPKCYWIWNHRRWLLFELVKLGKVNWKYEFGVVSKLLDLDQRNFHGWHYRRFVVKNMELECKNDTTLILKINLDEFNYTTLKIQKDFSNFSAWHNR 202          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_PONAB (Geranylgeranyl transferase type-2 subunit alpha OS=Pongo abelii GN=RABGGTA PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  189 QLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFGRIAXS-NSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            +LT + +  NP   T+W+ RR++++ L T          ++ EL F       N  +Y  WHHR W+  +L      +EL+   + L +D +N+H W YR++V  QA     +EL +   L+  +  N S+W+ R
Sbjct:   50 ELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_MOUSE (Geranylgeranyl transferase type-2 subunit alpha OS=Mus musculus GN=Rabggta PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  189 QLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFGRIAXS-NSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            +LT + +  NP   T+W+ RR++++ L T          ++ EL F       N  +Y  WHHR W+  +L      +EL+   + L  D +N+H W YR++V  QA     +EL +   L+  +  N S+W+ R
Sbjct:   50 ELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_HUMAN (Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens GN=RABGGTA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.850e-12
Identity = 40/135 (29.63%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  189 QLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFGRIAXS-NSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            +LT + +  NP   T+W+ RR++++ L T          ++ EL F       N  +Y  WHHR W+  +L      +EL+   + L +D +N+H W YR++V  QA     +EL +   L+  +  N S+W+ R
Sbjct:   50 ELTSQILGANPDFATLWNCRREVLQQLETQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERNFHCWDYRRFVATQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_BOVIN (Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus GN=RABGGTA PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.972e-11
Identity = 41/135 (30.37%), Postives = 68/135 (50.37%), Query Frame = 3
Query:  189 QLTKEAICLNPGNYTVWHFRRQII---------ETLHTDLQDELAFGRIAXS-NSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWV-LQALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            +LT + +  NP   T+W+ RR+++         E L T ++ EL F       N  +Y  WHHR W+  +L      +EL+   + L +D +N+H W YR++V  QA     +EL +   L+  +  N S+W+ R
Sbjct:   50 ELTSQILGANPDFATLWNCRREVLQQLEVQKSPEELATLVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEVDERNFHCWDYRRFVAAQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184          
BLAST of CX675079 vs. ExPASy Swiss-Prot
Match: PGTA_PIG (Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa GN=RABGGTA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.737e-11
Identity = 39/135 (28.89%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  189 QLTKEAICLNPGNYTVWHFRRQIIETLHTD---------LQDELAFGRIAXS-NSXNYQLWHHRRWVAEKLGTGAVNKELQFTKKMLSLDAKNYHAWSYRQWVL-QALGGWEDELDYCQILLGEDIFNNSAWNQR 560
            +LT + +  NP   T+W+ RR++++ L            ++ EL F       N  +Y  WHHR W+  +L      +EL+   + L +D +N+H W YR++V  QA     +EL +   L+  +  N S+W+ R
Sbjct:   50 ELTSQILGANPDFATLWNCRREVLQRLEVQKSPEELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWARELELCARFLEVDERNFHCWDYRRFVASQAAVPPAEELAFTDSLITRNFSNYSSWHYR 184          
The following BLAST results are available for this feature:
BLAST of CX675079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FNTA_CANAL1.609e-2129.25Protein farnesyltransferase/geranylgeranyltransfer... [more]
PGTA_YEAST9.456e-1429.14Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_DICDI3.593e-1329.37Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_RAT5.189e-1228.15Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_CANAL5.189e-1230.25Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_PONAB8.850e-1229.63Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_MOUSE8.850e-1229.63Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_HUMAN8.850e-1229.63Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_BOVIN1.972e-1130.37Geranylgeranyl transferase type-2 subunit alpha OS... [more]
PGTA_PIG5.737e-1128.89Geranylgeranyl transferase type-2 subunit alpha OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59F04-K7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675079 ID=CX675079; Name=CX675079; organism=Citrus sinensis; type=EST; length=658bp
ACGAGCAGCAGCAGGAGGCGGAGAGATTGCCACTGAGTCAAAGACCCGAG
TGGTCTGACGTCACTCCAATACCACAAGACGATGGCCCGAATCCAGTGGT
CCCGATCGCATACAAACCAGAATTCAGCGAAACCATGAGCTACTTCCGCG
CCGTCTATTACTCCGACGAGCGATCGTCTCGCTCCTTTCAACTCACCAAA
GAAGCCATCTGCCTTAACCCCGGAAACTACACTGTATGGCATTTCAGGCG
CCAAATAATTGAGACGCTTCATACCGACCTGCAAGATGAACTGGCTTTTG
GCCGCATTGCCNAGAGTAACTCCNAAAATTATCAGTTATGGCATCATAGA
AGGTGGGTTGCTGAGAAATTGGGAACTGGTGCTGTGAACAAGGAACTTCA
GTTCACCAAGAAGATGCTTTCTCTTGATGCTAAAAATTATCATGCCTGGT
CCTATAGGCAGTGGGTACTTCAGGCATTAGGAGGGTGGGAAGATGAGCTT
GACTATTGTCAGATACTCCTTGGAGAAGATATATTTAATAATTCTGCATG
GAATCAGAGATACTTTGTAGTAACCAGATCTCCCTTACTTGGAGGCCTAA
AAGCAATGAGAGATTCTGAAGTTAATTTTACCATTGAAGCAATTTTGGGT
AACCCTGA
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