CN186602

Overview
NameCN186602
Unique NameCN186602
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186602_ssr150 microsatellite CN186602_ssr150:150..167. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:225..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  300 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTV 572
            + A IDW E+  +H+FK ++PG           EG +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTV 115          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.579e-15
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = -1
Query:  297 LDVWDPFDGFLSSALTNAPSSA-----RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 656
            LDV D   G      T +  SA     R+    A    D KE P A+ F  D+PGL          + R+L +SGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   20 LDVPDGDAGAGGDNKTGSGGSATRTYVRDARAMAATPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 144          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.120e-14
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -1
Query:  297 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 608
            NAP+    R+    A    D KE P ++VF  D+PG++         +  +L ISGER +E+E++  K+ ++ER  GK +R+F LP+NA +E + A  ++GVLTVT
Sbjct:   27 NAPTRTYVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVLTVT 132          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = -1
Query:  297 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 608
            + PS A  R+    A    D KE P ++VF  D+PGL+            +L ISG+R++E+E++  K+ R+ER  GKF+++F LP++A  +++ A  ++GVLTVT
Sbjct:   35 SGPSRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVLTVT 140          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.723e-14
Identity = 46/111 (41.44%), Postives = 67/111 (60.36%), Query Frame = -1
Query:  297 TNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSK----EQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 611
            T  P+ A  R+    A    D K+ P A+ F  D+PGL+         E R+L ISGER +    E++E++ K+ R+ER  GKF+R+F LPDNA V+++ A  ++GVLTVT
Sbjct:   36 TGGPTRAYVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVLTVT 146          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = -1
Query:  297 DGFLSSALTNAP--SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 635
            DG   +   NAP  S  R+    A    D KE P ++VF+ D+PGL+         +  +L I GER +++E++  K+ R+ER  GK +R+F LP+NA  + + A  ++GVL+VT
Sbjct:   25 DGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVLSVT 139          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: SP21_STIAU (Spore protein SP21 OS=Stigmatella aurantiaca GN=hspA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 47/135 (34.81%), Postives = 74/135 (54.81%), Query Frame = -1
Query:  297 RRTNVFDPFS----LDVWDPFDGFLSSALTNAPSSARETSQFANA-RIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 686
            +RT  +DPF     L  WDPF+      L N P  A      A     + +ET +A++FKADLPG+            R+  +SG+R +E+ E++++++  ER+ G F R F LP+    + V+A ++NGVLT+T
Sbjct:   15 QRTREWDPFQQMQELMNWDPFE------LANHPWFANRQGPPAFVPAFEVRETKEAYIFKADLPGVDEKDIEVTLTGDRV-SVSGKREREKREESERFYAYERTFGSFSRAFTLPEGVDGDNVRADLKNGVLTLT 142          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 45/111 (40.54%), Postives = 64/111 (57.66%), Query Frame = -1
Query:  297 SALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 620
            S+ ++APS     +    A    D KE P ++VF  D+PGL+            +L ISGER +E EEK   K+ R+ER  GK +R+F LP+NA  E++ A  ++GVLTVT
Sbjct:   25 SSNSSAPSRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVLTVT 135          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.061e-13
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = -1
Query:  297 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 590
            R+    A    D KE P ++VF AD+PG++         +  +L +SGER++ ++++ D  K+ R+ER  GKF+R+F LP+NA VE + A  ++GVL VT
Sbjct:   48 RDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVLQVT 147          
BLAST of CN186602 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.820e-13
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = -1
Query:  297 RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 590
            R+    A    D KE   A+ F  D+PGL          + R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA V++V A   +GVLTVT
Sbjct:   38 RDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVLTVT 134          
The following BLAST results are available for this feature:
BLAST of CN186602 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS157_ARATH1.918e-1544.7915.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_MAIZE5.579e-1540.8017.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP21_PEA2.120e-1438.6817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_HELAN4.723e-1437.7417.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP18_ORYSJ4.723e-1441.4418.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_SOYBN8.056e-1436.5217.9 kDa class II heat shock protein OS=Glycine ma... [more]
SP21_STIAU1.374e-1334.81Spore protein SP21 OS=Stigmatella aurantiaca GN=hs... [more]
HSP21_IPONI2.344e-1340.5417.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP22_IPONI3.061e-1339.0018.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP23_MAIZE6.820e-1343.8817.0 kDa class II heat shock protein OS=Zea mays G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186602 ID=CN186602; Name=CN186602; organism=Citrus sinensis; type=EST; length=815bp
CTTTTTACTGCATTAANAAATATTTTATTGCATCACACTTTTATCATTTA
CAATATAGTTACAACGCTTGAGACTGGCTCCTGAAGCTCTTCCTAACACA
CAAACATAATCACATCAAATTAAACAGGGGGGAAGGGAAGCTCTTGCAAA
CACACACACACACACACAAGGGCTTTGCTTTCGTACCAAATTTATTAGCA
AACCAAAGACACAATCTTGAAAACATTTACACTTATCACTTAGCCAGAGA
TCTCAATGGCCTTAACTTCAGGTTTCTTCTCCTCCTGTTTAGGAACAGTC
ACTGTGAGCACACCATTCTCCATGCTGGCCTTAACCTGCTCCACCTTAGC
ATTGTCGGGCAACCTGAACCTCCTCAGGAACTTGCCACTGCTCCTCTCGA
CGCGATGCCACTTGTCATTCTTCTCTTCCTGCTCCTTGCTCCTCTCCCCG
CTTATCTGCAGAATCCTGCCCTCTTCAACCTCAACTTTCACTTCTTCTTT
CCTCAGCCCTGGAAGATCAGCCTTGAATACATGAGCCTGAGGAGTCTCTT
TCCAGTCAATTCTTGCATTGGCGAATTGGGATGTTTCCCTAGCCGAAGAC
GGCGCGTTGGTAAGGGCAGAGGACAAGAACCCGTCGAAAGGATCCCATAC
ATCTAATGAAAATGGATCGAACACGTTGGTTCTTCGGCCACCGAAGATGC
TTGGAATGAGTGACATTATGGCAAACTGGGGCGCTAATTAAATGCTCAAC
AACTCTTCCAAACCACTTTTGAATAGACTAACAAGAGTACAAGACTTTGA
CTATATGAAAAAAAA
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