CN186589

Overview
NameCN186589
Unique NameCN186589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:485..1296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.675e-51
Identity = 96/167 (57.49%), Postives = 127/167 (76.05%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F   V  V ++ L I YPT+A+ PH  VN YK V+AVA+ T+Y+FP A+KVK +LADPS F
Sbjct:  109 AAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.069e-50
Identity = 91/167 (54.49%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL+V  VY++GS++SPE+LD+  +DL  KF   V+ + A+ L++ YPT+A+APH   N +KN++A+A  TE  F +A  +KEY+ DPSKF
Sbjct:  109 APARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.382e-50
Identity = 91/167 (54.49%), Postives = 126/167 (75.45%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APAR G +AP+ V++P  NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL +  VY++GS++SPE+LD+  +DL  KF + V+ + A++L I YPT+A+APH   N +KN++A+A +TE  F QA  +KE++ DPSKF
Sbjct:  109 APARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 3.111e-50
Identity = 97/170 (57.06%), Postives = 126/170 (74.12%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG---IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L    I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+AV + T+Y+FP A+KVK YLADP+ F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 9.053e-50
Identity = 90/168 (53.57%), Postives = 130/168 (77.38%), Query Frame = -2
Query:  269 GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 772
            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L IPTKI +GT+EI+  V LI++GDKVG+SE+ALL  LG+ PFSYGLVV+ VY++G++Y+PEVLD++ ++L ++F S V  V +++LA++YPTLA+  H   N  +N++ VA  T+ SF +A+ +K ++ADPSKF
Sbjct:  108 GAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.182e-49
Identity = 92/167 (55.09%), Postives = 126/167 (75.45%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 1.182e-49
Identity = 92/167 (55.09%), Postives = 126/167 (75.45%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.544e-49
Identity = 91/167 (54.49%), Postives = 126/167 (75.45%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 2.017e-49
Identity = 92/167 (55.09%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+YSPEVLD++E  L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ T+Y+FP A+KVK +LADPS F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 4.493e-49
Identity = 91/167 (54.49%), Postives = 124/167 (74.25%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E  L  +F   V  V ++ L I YPT+A+ PH  +N YK V+A+++ TEY+FP  +KVK +LADPS F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAF 275          
The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RLA0_CHICK3.675e-5157.4960S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_DROME1.069e-5054.4960S acidic ribosomal protein P0 OS=Drosophila mela... [more]
RLA0_CERCA2.382e-5054.4960S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DANRE3.111e-5057.0660S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_CAEEL9.053e-5053.5760S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_HUMAN1.182e-4955.0960S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN1.182e-4955.0960S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_PIG1.544e-4954.4960S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_RAT2.017e-4955.0960S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_MOUSE4.493e-4954.4960S acidic ribosomal protein P0 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bp
TTTTGGGACAGAATATATATTGTCCTAATAAAGGATTATATAAAATAAAA
AGCAAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACATAACCA
TAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCGA
ACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTCCTTC
TTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAAC
CGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTCA
CTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAACC
ACATTCTTGTATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGGTCGG
GTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACTTGAGGCGA
ACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTAG
ACGGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGGG
TCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTGT
CACCCTTCCTAATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTTG
TTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGTCTGGGAGGG
GTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACCA
AACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACCTCCTCTTTC
ACTTCCTTCAAA
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