CN186589

Overview
NameCN186589
Unique NameCN186589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:485..1296. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 91/167 (54.49%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APAR   +AP+DV VP GNTG++P +TSFFQ L IPTKI +GT+EI + V L+ K  KVG SEA LL  L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+    S+ S++TA++L  +YPT+ +  H  VNAYKN+VAV+LATEY+F   ++ K +LADPS F
Sbjct:  107 APARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF 273          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.967e-48
Identity = 90/167 (53.89%), Postives = 123/167 (73.65%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD +E+ L  +F   V  V ++ L   YPT+A+ PH  +N YK V+A+++ T+Y+FP A+ VK +LADPS F
Sbjct:  109 AAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDYTFPLAENVKAFLADPSAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.332e-44
Identity = 80/167 (47.90%), Postives = 124/167 (74.25%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APAR G VAP+DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +   VLD+SE+ L++ F+S+++ + A++LA+++PTL +  H  VN+YK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  107 APARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.695e-44
Identity = 79/167 (47.31%), Postives = 124/167 (74.25%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APAR G +AP DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +  +VLD+SE+ L++ F+++++ + +L+LA+++PTL +  H  VNAYK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  107 APARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.320e-42
Identity = 80/167 (47.90%), Postives = 117/167 (70.06%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APA+ G+ AP DV +P G TG+DP  T FFQ L I TKI KG +EI   V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS  VLD++++ ++E FA+  + V A++ A+  P+ AAAPH  + A++N  A+ L T + FPQ  ++KE + +P+ F
Sbjct:  108 APAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF 274          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.185e-41
Identity = 77/167 (46.11%), Postives = 120/167 (71.86%), Query Frame = -2
Query:  269 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 769
            APAR G VAP D+ V   NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++GL V  VY+NG V+   +LD+++++LV  F S+VS + +++LAI YPTL +  H  +N YK+++AVA+A  Y +P+ + + + + +P K+
Sbjct:  107 APARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY 273          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.882e-41
Identity = 78/163 (47.85%), Postives = 115/163 (70.55%), Query Frame = -2
Query:  284 GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 772
            GAPA+ G+ AP DV++P G TG++P+QTSF Q L I TKIN+G ++I+  V +I+ G KVG+SEA LL KL I+PF+YGL  + +Y+ G+ YSP +   SE+DL+ KF   +  + A++L I YPT+A+ PH  +NA+KN++A++  T Y+F  A+K K   A
Sbjct:  107 GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.227e-39
Identity = 79/166 (47.59%), Postives = 120/166 (72.29%), Query Frame = -2
Query:  269 PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 766
            PAR+G++APIDV +PPG TG+DPS TSF + L I TKI KG +EI   V LI++G+KV +S A LL K  + P SYG+ V++VY++G +Y  +VLD++++D++EKF+  VS V AL+ A    T A+ PH+FV A+KN+VA+ + ++Y+FP    +K+++ +P  F
Sbjct:  111 PARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAF 275          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.362e-36
Identity = 78/156 (50.00%), Postives = 108/156 (69.23%), Query Frame = -2
Query:  305 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQAD 769
            APARVG +AP DV+VP GNTG++P  TSFFQ LNI TKI KGTVEI++  +++  GD+V +S A LL KL I PF Y + VQSV++ G ++  E L ++ DD+VEK+    +S V AL+L    PT A  PHM ++A+K ++  ++ATEY F + D
Sbjct:  116 APARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.991e-32
Identity = 74/153 (48.37%), Postives = 104/153 (67.97%), Query Frame = -2
Query:  311 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769
            APARVG + P DVVVP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:  116 APARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267          
The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RLA0_SCHPO1.001e-4854.4960S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0L_HUMAN4.967e-4853.8960S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_PODAN3.332e-4447.9060S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_NEUCR9.695e-4447.3160S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_EIMTE5.320e-4247.9060S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_YEAST1.185e-4146.1160S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_DICDI5.882e-4147.8560S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_PLAF83.227e-3947.5960S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_TRYCR4.362e-3650.0060S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEICH4.991e-3248.3760S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bp
TTTTGGGACAGAATATATATTGTCCTAATAAAGGATTATATAAAATAAAA
AGCAAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACATAACCA
TAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCGA
ACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTCCTTC
TTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAAC
CGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTCA
CTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAACC
ACATTCTTGTATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGGTCGG
GTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACTTGAGGCGA
ACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTAG
ACGGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGGG
TCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTGT
CACCCTTCCTAATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTTG
TTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGTCTGGGAGGG
GTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACCA
AACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACCTCCTCTTTC
ACTTCCTTCAAA
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