CN186589

Overview
NameCN186589
Unique NameCN186589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.235e-31
Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = -2
Query:  311 ARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 763
            ARVG ++P DV+V  G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+AL    PT +    M V+A+KN++AV++AT Y F +
Sbjct:  118 ARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.661e-27
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = -2
Query:  299 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKV 769
            A A+VG VA  DV V    TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     +++S V A +L     T A+ P+   NA+K+++ V+L  ++   +   V
Sbjct:  131 ACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18
Identity = 55/150 (36.67%), Postives = 78/150 (52.00%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            APA+ G V P DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:  110 APAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18
Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            APA+ G V P DVV+P G T L P       Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++    +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  110 APAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18
Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = -2
Query:  284 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 769
            AP R G +AP D+ V  G+TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    ++      LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  114 APVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17
Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = -2
Query:  335 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 769
            AP + G  AP D+ +  G+TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S+ +    L++    PT A    +   A+ N  AV++
Sbjct:  115 APIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17
Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            APA+ G   P DVV+P G T L P       Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y+P+VL + E + +     +      LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  110 APAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17
Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+P+VL + E + +     +      L++ I+YPT      +   AY     VA+   Y
Sbjct:  109 APAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16
Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = -2
Query:  311 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769
            APA+ G+  P DVV+P G T + P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+PEVL + E++ +     +      L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  109 APAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 51/150 (34.00%), Postives = 75/150 (50.00%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            APA+ G  AP DVVVP G T L P       Q L IP +I KG V I     +++ G+ +    A +L +LGI P   GL + + YE+G VY+PEVL + E+  +     +      L++ ++YPT      +   A+     VA+   Y
Sbjct:  109 APAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYISMLQQAYMHAFNLSVNVAYPTKQTIEAIIQKAFLGAKNVAVEAGY 258          
The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RLA0_LEIIN3.235e-3146.3660S acidic ribosomal protein P0 OS=Leishmania infa... [more]
RLA0_ENCCU1.661e-2739.4960S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_PYRHO2.405e-1836.67Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRAB6.996e-1835.33Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_METJA6.996e-1833.13Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_METVO2.659e-1733.56Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRFU4.535e-1733.33Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRKO5.923e-1734.00Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_THEON1.010e-1632.47Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_THESM1.319e-1634.00Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bp
TTTTGGGACAGAATATATATTGTCCTAATAAAGGATTATATAAAATAAAA
AGCAAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACATAACCA
TAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCGA
ACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTCCTTC
TTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAAC
CGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTCA
CTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAACC
ACATTCTTGTATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGGTCGG
GTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACTTGAGGCGA
ACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTAG
ACGGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGGG
TCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTGT
CACCCTTCCTAATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTTG
TTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGTCTGGGAGGG
GTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACCA
AACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACCTCCTCTTTC
ACTTCCTTCAAA
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