CN186589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 3.235e-31 Identity = 70/151 (46.36%), Postives = 102/151 (67.55%), Query Frame = -2 Query: 311 ARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 763 ARVG ++P DV+V G+TG++P+QTSFFQ LNI TKI KG VEI+T +++ GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + + +S V A+AL PT + M V+A+KN++AV++AT Y F + Sbjct: 118 ARVGAISPCDVIVAAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.661e-27 Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = -2 Query: 299 APARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKV 769 A A+VG VA DV V TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL L I+PF Y + + +YE+G +Y ++D+ E+D+ +++S V A +L T A+ P+ NA+K+++ V+L ++ + V Sbjct: 131 ACAKVGNVAQRDVWVESCITGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.405e-18 Identity = 55/150 (36.67%), Postives = 78/150 (52.00%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 APA+ G V P DVVVP G T L P Q L IP +I KG V I +++ G+ + A +L LGI+P GL V +VYE+G VY+P+VL + E + ++ + LA+ I+YPT + A+ N VA+ Y Sbjct: 110 APAKPGAVVPKDVVVPAGPTPLAPGPIVGQMQALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18 Identity = 53/150 (35.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 APA+ G V P DVV+P G T L P Q + IP +I +G V I +++ G+ + A +L LGI+P GL V +VYE+G VY+P+VL + E + ++ + LA+ I+YPT + A+ N AVA+ Y Sbjct: 110 APAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 6.996e-18 Identity = 54/163 (33.13%), Postives = 86/163 (52.76%), Query Frame = -2 Query: 284 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 769 AP R G +AP D+ V G+TG+ P + + IP I KG + I +++KG+ V AA+L +LGI+P GL + +VYE+G +Y+P+VL + E+ L+ ++ LA +YP P + A+ N A AL+ E +F + + LA Sbjct: 114 APVRGGQIAPCDIKVEKGSTGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.659e-17 Identity = 49/146 (33.56%), Postives = 78/146 (53.42%), Query Frame = -2 Query: 335 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 769 AP + G AP D+ + G+TG+ P S + + +P I KG + I + ++GD V + A +L+KL I+P GL V VYE+G VY PE+L + ED+ + K S+ + L++ PT A + A+ N AV++ Sbjct: 115 APIKAGATAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.535e-17 Identity = 50/150 (33.33%), Postives = 78/150 (52.00%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 APA+ G P DVV+P G T L P Q + IP +I +G V I +++ G+++ A +L LGI+P GL + +VYE+G +Y+P+VL + E + + + LA+ I+YPT + A+ N AVA+ Y Sbjct: 110 APAKPGAKVPKDVVIPAGPTSLAPGPIVGQMQAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PYRKO (Acidic ribosomal protein P0 homolog OS=Pyrococcus kodakaraensis GN=rplP0 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.923e-17 Identity = 51/150 (34.00%), Postives = 74/150 (49.33%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 APA+ G V P DVV+P G T L P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+G VY+P+VL + E + + + L++ I+YPT + AY VA+ Y Sbjct: 109 APAKAGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPDVLAIDESEYINMLQKAYMHAFNLSVNIAYPTKQTIEAILQKAYLGAKNVAVEAGY 258
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.010e-16 Identity = 50/154 (32.47%), Postives = 76/154 (49.35%), Query Frame = -2 Query: 311 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769 APA+ G+ P DVV+P G T + P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+G VY+PEVL + E++ + + L++ +YPT + AY VA+ Y P+ Sbjct: 109 APAKPGVPVPRDVVIPAGPTSISPGPLVGEMQALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THESM (Acidic ribosomal protein P0 homolog OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rplP0 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16 Identity = 51/150 (34.00%), Postives = 75/150 (50.00%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 APA+ G AP DVVVP G T L P Q L IP +I KG V I +++ G+ + A +L +LGI P GL + + YE+G VY+PEVL + E+ + + L++ ++YPT + A+ VA+ Y Sbjct: 109 APAKAGAPAPRDVVVPAGPTPLSPGPLVGEMQALGIPARIEKGKVSIQKDTVVLKAGEIITPQLANILNQLGIEPLEVGLKLLAAYEHGIVYTPEVLAIDEEQYISMLQQAYMHAFNLSVNVAYPTKQTIEAIIQKAFLGAKNVAVEAGY 258 The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bpback to top |