CN186589

Overview
NameCN186589
Unique NameCN186589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = -2
Query:  314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769
            AP   G VAP D+V+P G+TG+DP       Q +    +I  G+++++    ++  G++V S  + +L++LGI P   GL ++ V   G ++SPE LD+  +       S+ S    L++   YPT   AP M   A     +V L+     P
Sbjct:  111 APINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEGVLFSPEELDIDVESYRTDIESAASAARNLSVNAEYPTARTAPSMLAKAAGEAKSVGLSAAVESP 263          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 49/154 (31.82%), Postives = 74/154 (48.05%), Query Frame = -2
Query:  311 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769
            APA+ G V P DVV+P G T L P       Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+  +Y+P+VL + E + +     +      L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  109 APAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 46/150 (30.67%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            AP + G VAP D+ V  G+TG+ P       + + IP  I KG + I     + + G+ V    A +L+ LGI+P + GL + + YE+G +Y+P+VL + E++ V+K   + S    L++  + PT      +   A+ N  AV++ + +
Sbjct:  115 APIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIYTPDVLKIDEEEFVQKIQDAYSKAFNLSVNAAIPTAQTIETLLQKAFANARAVSIESAF 264          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15
Identity = 45/154 (29.22%), Postives = 82/154 (53.25%), Query Frame = -2
Query:  311 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769
            AP   G VAP D+V+P G+TG+DP       Q +    +I +G++++++   ++  G++V    + +L +LGI P   GL +++V+ +G ++ PE L+L  D+      ++      L++   YPT   AP M  +A  N  ++AL      P+
Sbjct:  112 APIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.543e-15
Identity = 43/150 (28.67%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            AP + G +AP D+VV  G+TG+ P       +   +P  I+KG + I     ++++G+ V    A +L+ LGI+P   GL + + YE+G VY+ +VL + E++ V+   S+ +    L++  + PT      +   A+    AV++ + +
Sbjct:  114 APIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDGIVYTSDVLKIDEEEFVQNIQSAFTSAFNLSVNAAIPTTETIETILQKAFTEAKAVSIESAF 263          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 42/153 (27.45%), Postives = 77/153 (50.33%), Query Frame = -2
Query:  314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769
            AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G +++PE L++  D+      S+ +    L++  +YPT   AP +         ++ L      P
Sbjct:  112 APINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 42/153 (27.45%), Postives = 77/153 (50.33%), Query Frame = -2
Query:  314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769
            AP   G VAP D+VVP G+TG+DP       Q +    +I +G+++++    +  +G+ V    + +L++LGI P   GL ++ V+  G +++PE L++  D+      S+ +    L++  +YPT   AP +         ++ L      P
Sbjct:  112 APINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.235e-14
Identity = 45/150 (30.00%), Postives = 80/150 (53.33%), Query Frame = -2
Query:  323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769
            AP + G +AP D+ V  G+TG+ P    S  + + IP  I+KG + I     + ++GD +    A +L+ LGI+P + GL V  VYE G +Y+ +VL + E++ + K   + +    L++    PT A    +   A+ +  AV++ + +
Sbjct:  115 APIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEGVIYTSDVLRIDEEEFLGKLQKAYTNAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.235e-14
Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = -2
Query:  314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769
            AP   G VAP D+V+P G+TG+DP       Q +    +I  G++ +     ++ +G++V    A +LA+LGI P   GL ++ V+  G ++ P+ L +  D+      S+    T L++   YPT   AP +   A     AV L      P
Sbjct:  112 APINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNLSVNAVYPTAQTAPTLIAKATSEAKAVGLFANIESP 264          
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14
Identity = 40/146 (27.40%), Postives = 81/146 (55.48%), Query Frame = -2
Query:  335 APARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 769
            APA+ G +AP D+VVP G+T   P       Q + IP KI+KG++ +    +++ +G+++  + A +L KL I P   G+ + +V E  ++Y+ +VL + E++ ++  A++      L++        +AP +   A ++ + +A+
Sbjct:  105 APAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250          
The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RLA0_NATPD8.552e-1630.72Acidic ribosomal protein P0 homolog OS=Natronomona... [more]
RLA0_THEGJ1.117e-1531.82Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]
RLA0_METTL1.117e-1530.67Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALMA1.117e-1529.2250S ribosomal protein L10E OS=Haloarcula marismort... [more]
RLA0_META35.543e-1528.67Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALSA9.456e-1527.45Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_HALS39.456e-1527.45Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_METVS1.235e-1430.00Acidic ribosomal protein P0 homolog OS=Methanococc... [more]
RLA0_HALVO1.235e-1430.07Acidic ribosomal protein P0 homolog OS=Halobacteri... [more]
RLA0_METST1.613e-1427.40Acidic ribosomal protein P0 homolog OS=Methanospha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bp
TTTTGGGACAGAATATATATTGTCCTAATAAAGGATTATATAAAATAAAA
AGCAAACTGAGTCTACAAAAAGCATTAAGAAAATAAAGCAAACATAACCA
TAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTGCACTTAGTCGA
ACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAGCAGGCTCTTCCTTC
TTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCACCGCCAGCAAC
CGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAGGTACTCCTTCA
CTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAAGAGCAACAGCAACC
ACATTCTTGTATGCATTGACGAACATGTGTGGAGCAGCTGCCAGGGTCGG
GTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATACACTTGAGGCGA
ACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCTCTGGGCTGTAG
ACGGAACCGTTTTCATAGACAGACTGGACAACAAGACCATAAGAGAAGGG
TCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGATCCCACCTTGT
CACCCTTCCTAATAAGCTCCACAGGTGTGATAATTTCAACAGTACCCTTG
TTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAGGTCTGGGAGGG
GTCGAGACCTGTGTTGCCGGGAGGAACAACCACATCAATTGGAGCAACCA
AACCAACACGAGCAGGAGCTCCAACCTTGTACTTAGCAACCTCCTCTTTC
ACTTCCTTCAAA
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