CN186589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_NATPD (Acidic ribosomal protein P0 homolog OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rplP0 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16 Identity = 47/153 (30.72%), Postives = 77/153 (50.33%), Query Frame = -2 Query: 314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769 AP G VAP D+V+P G+TG+DP Q + +I G+++++ ++ G++V S + +L++LGI P GL ++ V G ++SPE LD+ + S+ S L++ YPT AP M A +V L+ P Sbjct: 111 APINAGEVAPNDIVIPEGDTGVDPGPFVGDLQQVGANARIEGGSIKVVEDSTVLSAGEEVSSDLSNVLSELGIEPKEVGLDLRGVSSEGVLFSPEELDIDVESYRTDIESAASAARNLSVNAEYPTARTAPSMLAKAAGEAKSVGLSAAVESP 263
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15 Identity = 49/154 (31.82%), Postives = 74/154 (48.05%), Query Frame = -2 Query: 311 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769 APA+ G V P DVV+P G T L P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+ +Y+P+VL + E + + + L++ +YPT + AY VA+ Y P+ Sbjct: 109 APAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYINMLQQAYMHAFNLSVNTAYPTKQTIEAIIQKAYLGAKNVAVEAGYITPE 262
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METTL (Acidic ribosomal protein P0 homolog OS=Methanococcus thermolithotrophicus GN=rplP0 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15 Identity = 46/150 (30.67%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G VAP D+ V G+TG+ P + + IP I KG + I + + G+ V A +L+ LGI+P + GL + + YE+G +Y+P+VL + E++ V+K + S L++ + PT + A+ N AV++ + + Sbjct: 115 APIKGGAVAPCDIEVKAGSTGMPPGPFLGELKSVGIPAAIEKGKIGIKEDKVVAKAGEVVSHKLAVVLSALGIKPVTVGLNLLAAYEDGVIYTPDVLKIDEEEFVQKIQDAYSKAFNLSVNAAIPTAQTIETLLQKAFANARAVSIESAF 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.117e-15 Identity = 45/154 (29.22%), Postives = 82/154 (53.25%), Query Frame = -2 Query: 311 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQ 769 AP G VAP D+V+P G+TG+DP Q + +I +G++++++ ++ G++V + +L +LGI P GL +++V+ +G ++ PE L+L D+ ++ L++ YPT AP M +A N ++AL P+ Sbjct: 112 APIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSARGNAKSLALQAAIEDPE 265
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_META3 (Acidic ribosomal protein P0 homolog OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rplP0 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.543e-15 Identity = 43/150 (28.67%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G +AP D+VV G+TG+ P + +P I+KG + I ++++G+ V A +L+ LGI+P GL + + YE+G VY+ +VL + E++ V+ S+ + L++ + PT + A+ AV++ + + Sbjct: 114 APIKAGAIAPSDIVVEAGSTGMPPGPFLGELKGAGLPAVIDKGKIAIKDDTVIVKEGEVVSPKVAVVLSALGIKPTKVGLDLLAAYEDGIVYTSDVLKIDEEEFVQNIQSAFTSAFNLSVNAAIPTTETIETILQKAFTEAKAVSIESAF 263
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALSA (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarium GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15 Identity = 42/153 (27.45%), Postives = 77/153 (50.33%), Query Frame = -2 Query: 314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769 AP G VAP D+VVP G+TG+DP Q + +I +G+++++ + +G+ V + +L++LGI P GL ++ V+ G +++PE L++ D+ S+ + L++ +YPT AP + ++ L P Sbjct: 112 APINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALS3 (Acidic ribosomal protein P0 homolog OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15 Identity = 42/153 (27.45%), Postives = 77/153 (50.33%), Query Frame = -2 Query: 314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769 AP G VAP D+VVP G+TG+DP Q + +I +G+++++ + +G+ V + +L++LGI P GL ++ V+ G +++PE L++ D+ S+ + L++ +YPT AP + ++ L P Sbjct: 112 APINAGEVAPNDIVVPEGDTGIDPGPFVGELQTIGANARIQEGSIQVLDDSVVTEEGETVSDDVSNVLSELGIEPKEVGLDLRGVFSEGVLFTPEELEIDVDEYRADIQSAAASARNLSVNAAYPTERTAPDLIAKGRGEAKSLGLQASVESP 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METVS (Acidic ribosomal protein P0 homolog OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rplP0 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 1.235e-14 Identity = 45/150 (30.00%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G +AP D+ V G+TG+ P S + + IP I+KG + I + ++GD + A +L+ LGI+P + GL V VYE G +Y+ +VL + E++ + K + + L++ PT A + A+ + AV++ + + Sbjct: 115 APIKGGAIAPCDIEVKSGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVAKEGDVISPKLAVVLSALGIKPVTVGLNVLGVYEEGVIYTSDVLRIDEEEFLGKLQKAYTNAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.235e-14 Identity = 46/153 (30.07%), Postives = 74/153 (48.37%), Query Frame = -2 Query: 314 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFP 769 AP G VAP D+V+P G+TG+DP Q + +I G++ + ++ +G++V A +LA+LGI P GL ++ V+ G ++ P+ L + D+ S+ T L++ YPT AP + A AV L P Sbjct: 112 APINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNLSVNAVYPTAQTAPTLIAKATSEAKAVGLFANIESP 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.613e-14 Identity = 40/146 (27.40%), Postives = 81/146 (55.48%), Query Frame = -2 Query: 335 APARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 769 APA+ G +AP D+VVP G+T P Q + IP KI+KG++ + +++ +G+++ + A +L KL I P G+ + +V E ++Y+ +VL + E++ ++ A++ L++ +AP + A ++ + +A+ Sbjct: 105 APAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANAYQSAINLSVYAGILNSESAPLLIQKAARDALNLAI 250 The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bpback to top |