CN186589
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14 Identity = 44/150 (29.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 APA+ G +A D+V+ P T P + S FQ +P I KG + I + V ++KGD + +A +L L I P + GL + + YE+G +++ +VL +S++ ++ AS+ +LA+ ++ P M AY ++A+ + Sbjct: 105 APAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASAFLGAKSLAIEANFIVPEIVPDMISKAYLEAQSLAIEANF 254
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METM6 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rplP0 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14 Identity = 45/150 (30.00%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G AP D+ V G+TG+ P S + + IP I+KG + I +I++G+ V A +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + + L++ PT A + A+ + AV++ + + Sbjct: 115 APVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVIKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESELRIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METM5 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rplP0 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14 Identity = 42/150 (28.00%), Postives = 80/150 (53.33%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G VAP D+ + G+TG+ P S + + +P I+KG + I ++++G+ V + +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + + L++ PT A + A+ + AV++ + + Sbjct: 115 APVKGGAVAPCDIEIKAGSTGMPPGPFLSELKAVGLPAAIDKGKIGIKEDTVVVKEGEVVSQKLSVVLSALGIKPVTVGLNVLGVYEDGIIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14 Identity = 41/146 (28.08%), Postives = 78/146 (53.42%), Query Frame = -2 Query: 335 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVAL 769 APA+ G +A D+V+P G+TG +P Q + IP KI+KG + + L+ G++V ++ A+ L+++ I P G+ +++VYE ++Y+ EVL + E+ + ++ L++ + PT + AY + V + Sbjct: 107 APAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEEQTLADVQNAFRNAFNLSVNAAIPTEETISTIITLAYTRAINVGV 252
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METM7 (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rplP0 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14 Identity = 44/150 (29.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G AP D+ V G+TG+ P S + + IP I+KG + I ++++G+ V A +L+ LGI+P + GL V VYE+G +Y+ L + E++ + K + + L++ PT A + A+ + AV++ + + Sbjct: 115 APVKGGATAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKVVVKEGEVVSQKLAVVLSALGIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFIGKIQKAYTSAFNLSVNAVIPTSATIETIVQKAFNDAKAVSVESAF 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METMP (Acidic ribosomal protein P0 homolog OS=Methanococcus maripaludis GN=rplP0 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.005e-14 Identity = 44/150 (29.33%), Postives = 79/150 (52.67%), Query Frame = -2 Query: 323 APARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEY 769 AP + G +AP D+ V G+TG+ P S + + IP I+KG + I ++++G+ V A +L+ L I+P + GL V VYE+G +Y+ L + E++ V K + + L++ PT A + A+ + AV++ + + Sbjct: 115 APVKGGAIAPCDIEVKAGSTGMPPGPFLSELKAVGIPAAIDKGKIGIKEDKIVVKEGEVVSQKLAVVLSALDIKPVTVGLNVLGVYEDGVIYTESDLKIDEEEFVGKIQKAYTSAFNLSVNAVIPTSATVETIVQKAFNDAKAVSVESAF 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METTH (Acidic ribosomal protein P0 homolog OS=Methanobacterium thermoautotrophicum GN=rplP0 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.329e-13 Identity = 38/120 (31.67%), Postives = 67/120 (55.83%), Query Frame = -2 Query: 413 APARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALAL 769 APA+ G +AP D+VVP G+TG P Q + IP KI KG + + +++ G+++ A +L +L I+P G+ +++ YEN +VY+ +VL + E+ + + S L++ Sbjct: 107 APAKPGAIAPDDIVVPKGDTGFAPGPILGELQQIGIPAKIEKGKIVVSNDHVVVKAGEEIPPKVAGILTRLDIQPLEVGIDLRAAYENQTVYTADVLTIDEEKTLSDIQKAFSQAFNLSV 226
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THEVO (Acidic ribosomal protein P0 homolog OS=Thermoplasma volcanium GN=rplP0 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13 Identity = 48/163 (29.45%), Postives = 79/163 (48.47%), Query Frame = -2 Query: 284 APARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLA 769 A R G VAP D+ V P TG P + FQ + + T + KG + I L++KG+ + +A ++A L I+P GL + +Y +G +YS +VL L+ + + E+ A + ++ A + + A V A A A F + +KE+LA Sbjct: 105 ASPRGGEVAPADITVEPMVTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKEAVLVKKGEVIPKDKAKIMAMLDIKPLEVGLELLGLYSDGVLYSADVLSLTPEKIAEQMAIGYAQALQISKASMFFVAEVLKDLIAEA--KVKADAFAVAAQFITEENLKEFLA 265
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_THEAC (Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum GN=rplP0 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13 Identity = 48/159 (30.19%), Postives = 77/159 (48.43%), Query Frame = -2 Query: 287 RVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYL 760 R G +AP D+V+ P TG P + FQ + + T + KG + I ++KG+ + +A +L L I+P GL + +Y G VYS EVL L+ + + A++ S A+A + + + A + A ALA F D VK++L Sbjct: 108 RGGEIAPEDIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEMLEIKPLEVGLQLLGLYSEGVVYSKEVLSLTPERIANDMAAAFSQAKAIAKSSMFFVDEVLRDLLAEA--KIKADALALAGQFITEDNVKDFL 264
BLAST of CN186589 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.972e-12 Identity = 41/138 (29.71%), Postives = 65/138 (47.10%), Query Frame = -2 Query: 359 APARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAY 769 +P + G +AP D++V G T P Q IP I+ G V + + + G+ V A +L KL I P GL +++VY+NG++Y PE+L + E + LA+ +YPT A + A+ Sbjct: 111 SPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDESQYFSDITRAAQSAFNLAVNTAYPTSATIGTLLAKAF 248 The following BLAST results are available for this feature:
BLAST of CN186589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186589 ID=CN186589; Name=CN186589; organism=Citrus sinensis; type=EST; length=812bpback to top |