CN186578

Overview
NameCN186578
Unique NameCN186578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: ERDL8_ARATH (Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.180e-16
Identity = 40/102 (39.22%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  248 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 553
            LA+ G+ +YI  FS GMG  PW++ SEI+P+  +G  GG+    NW+S+ +V+ +F +         TF ++G + V A++F+   VPETKG  +EEI+ M+
Sbjct:  369 LAVSGVLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTF-NFLMIWSPHGTFYVYGGVCVLAIIFIAKLVPETKGRTLEEIQAMM 469          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: ERDL6_ARATH (Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.483e-16
Identity = 38/107 (35.51%), Postives = 67/107 (62.62%), Query Frame = -3
Query:  251 FGWLAL---VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKM 562
            + WL++   VG+   ++FFS GMG  PW++ SEI P+  +G+ G IA  ANW  + ++  +  +L  A  +  TF ++G++    ++FV ++VPETKG  +EE++ +
Sbjct:  380 YSWLSILSVVGVVAMVVFFSLGMGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMT-ANLLLAWSSGGTFTLYGLVCAFTVVFVTLWVPETKGKTLEELQSL 485          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.483e-16
Identity = 42/131 (32.06%), Postives = 69/131 (52.67%), Query Frame = -3
Query:  191 TRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKS 583
            T G  +   W+ +V L +YI+F+    G   W++  E++P + RG   G        +NLIV+  F  +  A+G +W F++F VI + +  F    VPETKG  +EEIE  L+ R    K  + + L +++
Sbjct:  330 TLGLSASTAWMTVVFLGVYIVFYQATWGPVVWVLMPELFPSKARGAATGFTTLVLSAANLIVSLVFPLMLSAMGIAWVFMVFSVICLLSFFFAFYMVPETKGKSLEEIEASLKKRFKKKKSTQNQVLNERT 460          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: MSSP2_ARATH (Monosaccharide-sensing protein 2 OS=Arabidopsis thaliana GN=MSSP2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = -3
Query:  236 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRA 553
            L+ V + LY  FF  G G AP I+ SEI+P R RG+C  I A   WI ++IV  S   L ++IG +  F ++ ++   + +FV I VPETKG+P+E I +   + A
Sbjct:  615 LSTVSVVLYFCFFVMGFGPAPNILCSEIFPTRVRGICIAICALTFWICDIIVTYSLPVLLKSIGLAGVFGMYAIVCCISWVFVFIKVPETKGMPLEVITEFFSVGA 720          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR12_DANRE (Solute carrier family 2, facilitated glucose transporter member 12 OS=Danio rerio GN=slc2a12 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.304e-15
Identity = 38/106 (35.85%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  239 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 556
            W++LV L +Y+  FS  +G    +V S I+P   RG    + +  NW +NL+++ +FL+LT+ IG       +  +S   ++FV++FVPETKG  +E+I K L ++
Sbjct:  475 WISLVSLLVYVAGFSISLGPMVHVVLSAIFPTGIRGKAVSVISAFNWATNLLISMTFLTLTERIGLPTVIFSYSAMSFLLVVFVIVFVPETKGRSLEQISKELAMK 580          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: XYLL3_ARATH (D-xylose-proton symporter-like 3 OS=Arabidopsis thaliana GN=At5g59250 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  248 FGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 562
            F  +A+  L LY+  +    G   W++ SEI+PLR RG    +A   N+ SN IV  +F  L + +G    FL+FG I++ +LLFV++ VPETKGL +EEIE  +
Sbjct:  452 FPLVAVGALLLYVGCYQISFGPISWLMVSEIFPLRTRGRGISLAVLTNFGSNAIVTFAFSPLKEFLGAENLFLLFGGIALVSLLFVILVVPETKGLSLEEIESKI 556          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 40/110 (36.36%), Postives = 60/110 (54.55%), Query Frame = -3
Query:  245 KFGW---LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 565
            K  W   L++V    ++ FFS G+G   W+ +SE++PL+ R     +    N + N  V+ SFLSLT AI T   F +F  ++  A  F    +PETKG  +EEIE + +
Sbjct:  371 KLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSEVFPLKLRAQGASLGVAVNRVMNATVSMSFLSLTSAITTGGAFFMFAGVAAVAWNFFFFLLPETKGKSLEEIEALFQ 480          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR8_RAT (Solute carrier family 2, facilitated glucose transporter member 8 OS=Rattus norvegicus GN=Slc2a8 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 38/106 (35.85%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  239 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 556
            WLA+  + L+I  F+ G G  PW++ SEI+PL  +GV  G+    NW    +V + F S+ + +     F +     + ++LF L FVPETKG  +E+I    E R
Sbjct:  373 WLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHIKGVATGVCVLTNWFMAFLVTKEFNSIMEILRPYGAFWLTAAFCILSVLFTLTFVPETKGRTLEQITAHFEGR 478          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR8_HUMAN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = -3
Query:  239 WLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELR 556
            WLA+  + L+I  F+ G G  PW++ SEI+PL  +GV  GI    NW+   +V + F SL + +     F +     + ++LF L  VPETKG  +E+I    E R
Sbjct:  372 WLAVGSMCLFIAGFAVGWGPIPWLLMSEIFPLHVKGVATGICVLTNWLMAFLVTKEFSSLMEVLRPYGAFWLASAFCIFSVLFTLFCVPETKGKTLEQITAHFEGR 477          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: YNCC_BACSU (Putative metabolite transport protein yncC OS=Bacillus subtilis GN=yncC PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.460e-14
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = -3
Query:  191 LYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKS 532
            L++ F    +G   W+V +EI+P R RG+  GI+    WI N ++  +F  L  ++G S+TF IF  + V A+ FV  F+PETKG  +EE+E+       HF+     + P++S
Sbjct:  361 LFLAFMQGCVGPVTWLVIAEIFPQRLRGLGSGISVFFLWILNFVIGFAFPILLSSVGLSFTFFIFVALGVLAIGFVYKFMPETKGRTLEELEE-------HFRSRHDHNTPEQS 467          
The following BLAST results are available for this feature:
BLAST of CN186578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ERDL8_ARATH1.180e-1639.22Sugar transporter ERD6-like 8 OS=Arabidopsis thali... [more]
ERDL6_ARATH4.483e-1635.51Sugar transporter ERD6-like 6 OS=Arabidopsis thali... [more]
CSBC_BACSU4.483e-1632.06Probable metabolite transport protein csbC OS=Baci... [more]
MSSP2_ARATH1.304e-1540.57Monosaccharide-sensing protein 2 OS=Arabidopsis th... [more]
GTR12_DANRE1.304e-1535.85Solute carrier family 2, facilitated glucose trans... [more]
XYLL3_ARATH6.473e-1541.90D-xylose-proton symporter-like 3 OS=Arabidopsis th... [more]
PLT6_ARATH6.473e-1536.36Probable polyol transporter 6 OS=Arabidopsis thali... [more]
GTR8_RAT6.473e-1535.85Solute carrier family 2, facilitated glucose trans... [more]
GTR8_HUMAN1.104e-1436.79Solute carrier family 2, facilitated glucose trans... [more]
YNCC_BACSU2.460e-1435.96Putative metabolite transport protein yncC OS=Baci... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003C04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186578 ID=CN186578; Name=CN186578; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTAACAACTGTAATAATTAACCCCTATGTCCCAGAAAGTCTTGAA
TATTTTTATTTTATTAGGAGGCCTTTCCCAGGTACAGAATATTACATCTC
TAAGGAACTCCACTGAACAATATCCAGGATTTGCTATTGAGATTTCTGCT
TATAAAACTTCTGAAAAAAAAATATATATCACACAGATTGGCTCTTGTCC
GGTAGGGATCTCTTCTCCCAGAACTTGAAATGCAGAGCTCTTAGCTCCAG
CATCTTTTCAATTTCCTCAATGGGAAGTCCCTTAGTTTCCGGAACAAAAA
TCAGTACAAAGAGCAAGGCTGCAACAGAAATTACACCAAATATCAGAAAT
GTCCAGGATGTTCCGATTGCCTGTGTCAAAGATAGGAAGGATTGTGCCAC
GATGAGGTTAGATATCCAGTTTGCAGTGGCGGCTATTCCTCCACATACCC
CTCGGAAACGTAAAGGATAGATCTCAGAATTCACAATCCATGGCGCCGTT
CCCATTCCAGGAGAGAAAAATATAATGTAGAGTGCCAAGCCAACCAGAGC
GAGCCATCCAAATTTGCTCGGGCATCCCCTTGTGTACCATTCCCTGCTCT
CATCATGGCAGAGATCCTTCACTGTGCTATTTGAGATCAAACATGCTCCA
GGAAATAGCTTATTGGAATGTGAAGCACAGAACCCACAGTCTGGAGATGA
AGCCTTCAAACACTTCATACAATCCCACCTATCAGCAGTTGCAGCTGAAC
TATAATCCG
back to top