CN186578

Overview
NameCN186578
Unique NameCN186578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: YD387_YEAST (Probable metabolite transport protein YDR387C OS=Saccharomyces cerevisiae GN=YDR387C PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.129e-12
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = -3
Query:  245 LALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 553
            L L+ + +Y+  ++  MG+ PW    E  PL  R       A  NW++N  V+ ++LS    IG   T LIF   +V A  FV  + PE KGL +EE+ ++ +
Sbjct:  441 LLLISVVIYVAAYASAMGSVPWTC-VEFLPLNRRSFGASCIACTNWLTNAFVSMTYLSTINTIGDENTMLIFAFFTVCAWFFVYFWYPEVKGLSLEEVGRVFD 542          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GAL2_YEAST (Galactose transporter OS=Saccharomyces cerevisiae GN=GAL2 PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 37/120 (30.83%), Postives = 63/120 (52.50%), Query Frame = -3
Query:  188 LVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFKFWEKRSLPDKSQ 547
            +V    YI  ++       W++ +E +PLR +  C  +A+ +NW+   ++A     +T AI   + ++  G + VA   +V  FVPETKGL +EEI+++          WE+  LP KS+
Sbjct:  436 IVFTCFYIFCYATTWAPVAWVITAESFPLRVKSKCMALASASNWVWGFLIAFFTPFITSAINFYYGYVFMGCL-VAMFFYVFFFVPETKGLSLEEIQEL----------WEEGVLPWKSE 544          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: ERDL3_ARATH (Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = -3
Query:  248 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 544
            +G+  +I  F+ GMG  PWI+ SEI+P+  +   G +   ANW    IVA ++  + +    S TFLIF  I  A ++F+   VPETKG  +E+I+  L
Sbjct:  368 IGVVGFISSFAVGMGGLPWIIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLE-WNASGTFLIFFTICGAGIVFIYAMVPETKGRTLEDIQASL 465          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = -3
Query:  260 WLALVG---LALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEI 556
            W A+V    + +Y+  F+   G   W+V SEI+PL  R     I  + N I   I+AQ FL++   +     FL+F    V   +FV IF+PETKG+PIEE+
Sbjct:  385 WYAIVVVTFICIYVAGFAWSWGPLGWLVPSEIFPLEIRSAAQSITVSVNMIFTFIIAQIFLTMLCHLKFG-LFLVFAFFVVVMSIFVYIFLPETKGIPIEEM 485          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: ARAE_KLEOX (Arabinose-proton symporter OS=Klebsiella oxytoca GN=araE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.143e-11
Identity = 36/107 (33.64%), Postives = 59/107 (55.14%), Query Frame = -3
Query:  248 SKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 568
            S   WL++    + I  ++       WI+ SEI PL+ R      + T NW+SN+I+  +FL+L  AIG + TF ++  ++VA +      +PETK + +E IE+ L
Sbjct:  355 SGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDAIGAAGTFWLYTALNVAFIGVTFWLIPETKNVTLEHIERRL 461          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: ITR1_SCHPO (Myo-inositol transporter 1 OS=Schizosaccharomyces pombe GN=itr1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 35/114 (30.70%), Postives = 61/114 (53.51%), Query Frame = -3
Query:  245 YTRGCPSKFGWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 586
            YT G  + +  + L+ + +Y+  ++ G+G  PW   SE++P+  RG+  G++   NW  NL +  SFL+L   I  + TF ++G +     L  L   P+     IEEI ++L+
Sbjct:  433 YTSGQSNAWAIVVLISMIVYVASYASGLGNLPW-QQSELFPMSVRGLGTGMSTAVNWAGNLGIGASFLTLMSEITPTGTFALYGGLCFLGWLGALFCYPDLTDYTIEEIGELLK 545          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: EDL10_ARATH (Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3
Query:  248 VGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKML 544
            + + +Y  FF+ G+G  PWI+ SEI+P+  +   G I A  +W +   V+  F  + +      TF IF ++   +LLF+ + VPETKG  +EE++  L
Sbjct:  357 INILVYFGFFAIGIGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFE-WSAQGTFYIFAMVGGLSLLFIWMLVPETKGQSLEELQASL 454          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: GTR2_CHICK (Solute carrier family 2, facilitated glucose transporter member 2 OS=Gallus gallus GN=SLC2A2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.949e-11
Identity = 38/118 (32.20%), Postives = 58/118 (49.15%), Query Frame = -3
Query:  224 SKFGWLA---LVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLSLTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLELRALHFK 568
            S+F W++   +V + L++IFF  G G  PW + +E++    R     +A   NW  N IV   F  +    G  + F++F V+ +   LF  + VPETKG   EEI      + L  K
Sbjct:  403 SQFAWMSYVSMVAIFLFVIFFEVGPGPIPWFIVAELFSQGPRPAAIAVAGFCNWACNFIVGMCFQYIADLCG-PYVFVVFAVLLLVFFLFAYLKVPETKGKSFEEIAAAFRRKKLPAK 519          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: XYLE_ECOLI (D-xylose-proton symporter OS=Escherichia coli (strain K12) GN=xylE PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  245 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS------LTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 559
            G +AL+ +  Y+  F+   G   W++ SEI+P   RG    IA  A W++N  V+ +F        L       +++ I+G + V A LF+  FVPETKG  +EE+E + E
Sbjct:  369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479          
BLAST of CN186578 vs. ExPASy Swiss-Prot
Match: XYLE_ECO57 (D-xylose-proton symporter OS=Escherichia coli O157:H7 GN=xylE PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.545e-11
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  245 GWLALVGLALYIIFFSPGMGTAPWIVNSEIYPLRFRGVCGGIAATANWISNLIVAQSFLS------LTQAIGTSWTFLIFGVISVAALLFVLIFVPETKGLPIEEIEKMLE 559
            G +AL+ +  Y+  F+   G   W++ SEI+P   RG    IA  A W++N  V+ +F        L       +++ I+G + V A LF+  FVPETKG  +EE+E + E
Sbjct:  369 GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479          
The following BLAST results are available for this feature:
BLAST of CN186578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
YD387_YEAST5.129e-1233.98Probable metabolite transport protein YDR387C OS=S... [more]
GAL2_YEAST8.749e-1230.83Galactose transporter OS=Saccharomyces cerevisiae ... [more]
ERDL3_ARATH8.749e-1238.38Sugar transporter ERD6-like 3 OS=Arabidopsis thali... [more]
STP1_ARATH1.143e-1138.24Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
ARAE_KLEOX1.143e-1133.64Arabinose-proton symporter OS=Klebsiella oxytoca G... [more]
ITR1_SCHPO1.492e-1130.70Myo-inositol transporter 1 OS=Schizosaccharomyces ... [more]
EDL10_ARATH1.492e-1134.34Sugar transporter ERD6-like 10 OS=Arabidopsis thal... [more]
GTR2_CHICK1.949e-1132.20Solute carrier family 2, facilitated glucose trans... [more]
XYLE_ECOLI2.545e-1134.23D-xylose-proton symporter OS=Escherichia coli (str... [more]
XYLE_ECO572.545e-1134.23D-xylose-proton symporter OS=Escherichia coli O157... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186578 ID=CN186578; Name=CN186578; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTAACAACTGTAATAATTAACCCCTATGTCCCAGAAAGTCTTGAA
TATTTTTATTTTATTAGGAGGCCTTTCCCAGGTACAGAATATTACATCTC
TAAGGAACTCCACTGAACAATATCCAGGATTTGCTATTGAGATTTCTGCT
TATAAAACTTCTGAAAAAAAAATATATATCACACAGATTGGCTCTTGTCC
GGTAGGGATCTCTTCTCCCAGAACTTGAAATGCAGAGCTCTTAGCTCCAG
CATCTTTTCAATTTCCTCAATGGGAAGTCCCTTAGTTTCCGGAACAAAAA
TCAGTACAAAGAGCAAGGCTGCAACAGAAATTACACCAAATATCAGAAAT
GTCCAGGATGTTCCGATTGCCTGTGTCAAAGATAGGAAGGATTGTGCCAC
GATGAGGTTAGATATCCAGTTTGCAGTGGCGGCTATTCCTCCACATACCC
CTCGGAAACGTAAAGGATAGATCTCAGAATTCACAATCCATGGCGCCGTT
CCCATTCCAGGAGAGAAAAATATAATGTAGAGTGCCAAGCCAACCAGAGC
GAGCCATCCAAATTTGCTCGGGCATCCCCTTGTGTACCATTCCCTGCTCT
CATCATGGCAGAGATCCTTCACTGTGCTATTTGAGATCAAACATGCTCCA
GGAAATAGCTTATTGGAATGTGAAGCACAGAACCCACAGTCTGGAGATGA
AGCCTTCAAACACTTCATACAATCCCACCTATCAGCAGTTGCAGCTGAAC
TATAATCCG
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