CN186574

Overview
NameCN186574
Unique NameCN186574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig199 contig Csv1_Contig199:179..834. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.543e-14
Identity = 59/173 (34.10%), Postives = 84/173 (48.55%), Query Frame = -3
Query:  115 DVHVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEA-----GGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK--VIDVQI 609
            D H +  N        PR    D+    + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL               IKGE  A+E+      G  FSS   R+ LP+   K D +KAE+KNGVL +++PK K E +  VI+V++
Sbjct:   41 DQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = -3
Query:  133 RRPRRTALDISPFG--LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAE--EAGGASFSSYDTRLQL-PDNCEKDKVKAELKNGVLYISIPKTKVERK 567
            RRP R A   + F     DP    +++ ++L  MD L        GR+   G   +R  W+ KE E  + +R DMPGL              VIKGE   E  E  GA+ + Y  R++L P+    D++KAE+KNGVL + +PK K E++
Sbjct:   69 RRPTRDATMPAFFSDVFRDPFSAPQSLGRLLSLMDDLATPA----GRA---GAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQR 211          
BLAST of CN186574 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.363e-11
Identity = 57/192 (29.69%), Postives = 91/192 (47.40%), Query Frame = -3
Query:  133 AQAGGENKD---TSVDVHVNSGNQGTQVERRPRRTAL-DISPFGLMDPSF-----PT--RTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLFXXXXXXXXXXXXXVIKGEHRAEEAGGA----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERK 645
            A + GE +D   T V V      +     RR R++   +    G   P+      PT   T+ Q  + M+R+ ++    P +      GQV      KE+++  K+R+++PGL               IKG+H+AEE  G+          S+  Y+T L LPD+ + + +KAELKNGVL + IP+T+  +K
Sbjct:   43 ATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLM----GQV------KEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKK 224          
The following BLAST results are available for this feature:
BLAST of CN186574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS22M_PEA5.543e-1434.10Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS24M_ORYSJ2.575e-1134.6724.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ARATH3.363e-1129.6926.5 kDa heat shock protein, mitochondrial OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186574 ID=CN186574; Name=CN186574; organism=Citrus sinensis; type=EST; length=656bp
ATGTCATTCTTCAGCTCTGCATCTCAATTTATTTATACACTTACAAAGCT
GGACATGTAGATCACAAAACCTCAACATACACATTTCGCTAGGCACTCAT
TATTATAATTACAGAATCTGAACATCAATGACCTTGCGCTCCACCTTTGT
CTTAGGAATTGAAATGTAAAGAACACCATTCTTGAGCTCTGCCTTGACCT
TATCTTTCTCACAGTTATCAGGAAGCTGGAGACGAGTATCGTAAGAGCTA
AAACTTGCACCTCCAGCTTCTTCTGCCCTGTGCTCTCCTTTAATGACAAG
GACTTCATCTTCCACCGACACTTTGACATCCTCCTTAAAGAGTCCAGGCA
TGTCAAATCTCATTTTGATCTCATTTTCCTCCTCTTTGATGTCCCACGGT
GTTCTCACCTGGCCTCCCCCGCCAGCCCGGCTCCTCCCCGGAAAAGCCAT
CGTATCCTCTAATAGACGGTCCATTGTGTCCAGCATCTGCCGCATTGTCC
TCGTTGGAAACGAGGGATCCATCAAACCGAAAGGTGAAATATCGAGAGCC
GTTCTTCGAGGCCTCCTCTCCACTTGGGTTCCTTGGTTACCGGAATTAAC
ATGGACGTCAACCGAAGTATCCTTGTTCTCCCCACCAGCCTGAGCTCTCA
CGGCTT
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