CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SACD2 (Peptide methionine sulfoxide reductase msrA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msrA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 60/99 (60.61%), Postives = 73/99 (73.74%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FG GCFWG E  F ++PGV  T VGYS G+  NP+YE+VCSG+T HNEVV V Y+P + SF  LL +FW  H+PT   RQGND+GTQYRSG+Y Y+ EQ
Sbjct:   53 FGLGCFWGAERKFWQLPGVYVTAVGYSAGFTPNPTYEEVCSGSTGHNEVVLVVYNPSQVSFKKLLAVFWESHNPTQGMRQGNDLGTQYRSGVYVYSDEQ 151          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALPB (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.192e-31
Identity = 66/130 (50.77%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALAR (Peptide methionine sulfoxide reductase msrA OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.192e-31
Identity = 67/130 (51.54%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VRV YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRVVYDPAVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALTO (Peptide methionine sulfoxide reductase msrA OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=msrA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.070e-30
Identity = 65/130 (50.00%), Postives = 79/130 (60.77%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            RP   P +  +  +        P  G   + FG GCFWG E  F  +PGV  T VGY+ GY  NPSY++VCSG T H EVV V+YDP + +++ LL +FW  HDPT   RQGNDVGTQYRS IY  T EQ
Sbjct:   20 RPVATPVTEPHEVLGTPLTGPFPE-GTAVAVFGMGCFWGAERLFWTLPGVLTTSVGYAGGYTPNPSYDEVCSGRTGHAEVVHVRYDPTKITYEDLLKVFWENHDPTQGMRQGNDVGTQYRSAIYPTTDEQ 148          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALTY (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhimurium GN=msrA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.397e-30
Identity = 66/130 (50.77%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALNS (Peptide methionine sulfoxide reductase msrA OS=Salmonella newport (strain SL254) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.397e-30
Identity = 66/130 (50.77%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_GEOMG (Peptide methionine sulfoxide reductase msrA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.397e-30
Identity = 61/106 (57.55%), Postives = 73/106 (68.87%), Query Frame = 1
Query:  325 PGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            P  + + FGAGCFW VE  F+RV GV  T  GY  G+  +P+YE+VCS  T H EVV V YDP   S+D LL +FW  HDPT LNRQG D+GT YRS I+F+TPEQ
Sbjct:    5 PELEKATFGAGCFWHVEAEFRRVSGVVATHAGYMGGWKDHPTYEEVCSKETGHAEVVEVVYDPARVSYDELLRIFWTIHDPTQLNRQGPDIGTNYRSVIFFHTPEQ 110          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_KLEP3 (Peptide methionine sulfoxide reductase msrA OS=Klebsiella pneumoniae (strain 342) GN=msrA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.825e-30
Identity = 67/130 (51.54%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+      +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VRV YDP+  S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVPA-GMEVALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPQVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALSV (Peptide methionine sulfoxide reductase msrA OS=Salmonella schwarzengrund (strain CVM19633) GN=msrA PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.113e-30
Identity = 65/130 (50.00%), Postives = 83/130 (63.85%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL +FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQIFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_RHOCS (Peptide methionine sulfoxide reductase msrA OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=msrA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 67/127 (52.76%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  265 DPASTENSAIAQGPDDDVPAP-GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            +P    N     G     P P G + + FG GCFWGVE  F +VPGV  T  GY+ G   NP+YE+VC+G T H EVV V YDP   S+  LL +FW  HDPT   RQGNDVGTQYRS IY  TPEQ
Sbjct:   23 EPLPVGNIHAVNGHPLKPPFPAGLETAVFGMGCFWGVERKFWQVPGVYSTAAGYAGGPTPNPTYEEVCTGRTGHAEVVLVVYDPATVSYAELLKVFWENHDPTQGMRQGNDVGTQYRSAIYATTPEQ 149          
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_SACD23.677e-3160.61Peptide methionine sulfoxide reductase msrA OS=Sac... [more]
MSRA_SALPB8.192e-3150.77Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALAR8.192e-3151.54Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALTO1.070e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALTY1.397e-3050.77Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALNS1.397e-3050.77Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_GEOMG1.397e-3057.55Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_KLEP31.825e-3051.54Peptide methionine sulfoxide reductase msrA OS=Kle... [more]
MSRA_SALSV3.113e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_RHOCS4.065e-3052.76Peptide methionine sulfoxide reductase msrA OS=Rho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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