CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBY (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AYE) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            Q + FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBT (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=msrA PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            Q + FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBS (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain SDF) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            Q + FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIBC (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain ACICU) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            Q + FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB5 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB0057) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            Q + FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIB3 (Peptide methionine sulfoxide reductase msrA OS=Acinetobacter baumannii (strain AB307-0294) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            Q + FG GCFW VE  F ++ GV K   GY+ G+  +P+YE VC G T H EVV + +D ++ ++  LLD+F+A HDPT LNRQGND+GTQYRS IY++  EQ
Sbjct:    2 QQALFGGGCFWCVEAVFLQIRGVEKVTSGYAGGHTTHPTYEQVCQGDTQHAEVVLIDFDEQQVTYSQLLDVFFATHDPTTLNRQGNDIGTQYRSVIYYFNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA1_CAUCR (Peptide methionine sulfoxide reductase msrA 1 OS=Caulobacter crescentus GN=msrA1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 60/126 (47.62%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  268 PASTENSAIAQGPDDDVPAP-GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            P  T  +    G     P P G + +    GCFWGVE  F +VPGV  T  GY+ G   NP+YE+VC+G T H EVV V +DPK  +++ LL  FW  HDPT   RQGND+GTQYRSG+Y  +  Q
Sbjct:   23 PIPTAQTHFVNGHALKGPYPEGLETAIVAMGCFWGVERVFWKVPGVYVTAAGYAAGITPNPTYEEVCTGRTGHTEVVLVVFDPKVVTYEALLKTFWENHDPTQGMRQGNDIGTQYRSGLYVTSDAQ 148          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_BOVIN (Peptide methionine sulfoxide reductase OS=Bos taurus GN=MSRA PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.888e-27
Identity = 55/99 (55.56%), Postives = 68/99 (68.69%), Query Frame = 1
Query:  328 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIY 624
            G Q + FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCSG T H EVVRV + P+  SF+ LL +FW  HDPT   RQGND G+QYRS IY
Sbjct:   62 GTQMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQPEHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIY 160          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_OCHAN (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi GN=msrA PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 62/126 (49.21%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFY 630
            R  P P S  +   ++   +  P  G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL +FW  HDPT   RQGND+GT YRS IY +
Sbjct:   23 RAQPIPTSATHFVNSRPLKEPWPE-GYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTF 147          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_HUMAN (Peptide methionine sulfoxide reductase OS=Homo sapiens GN=MSRA PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.466e-27
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  328 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIY 624
            G Q + FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDPT   RQGND GTQYRS IY
Sbjct:   64 GTQMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCSEKTGHAEVVRVVYQPEHMSFEELLKVFWENHDPTQGMRQGNDHGTQYRSAIY 162          
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ACIBY1.446e-2752.43Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBT1.446e-2752.43Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBS1.446e-2752.43Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIBC1.446e-2752.43Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB51.446e-2752.43Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA_ACIB31.446e-2752.43Peptide methionine sulfoxide reductase msrA OS=Aci... [more]
MSRA1_CAUCR1.446e-2747.62Peptide methionine sulfoxide reductase msrA 1 OS=C... [more]
MSRA_BOVIN1.888e-2755.56Peptide methionine sulfoxide reductase OS=Bos taur... [more]
MSRA_OCHAN2.466e-2749.21Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_HUMAN2.466e-2756.57Peptide methionine sulfoxide reductase OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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