CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_BRUA1 (Peptide methionine sulfoxide reductase msrA OS=Brucella abortus (strain S19) GN=msrA PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.561e-26
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFY 630
            FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  + + LL +FW  HDPT   RQGND+GT YRS IY +
Sbjct:   53 FGMGCFWGAERLFWQVPGVYVTAVGYAGGITPNPTYEETCTGLTGHAEVVLVVYDPKVVTLNELLALFWEEHDPTQGMRQGNDIGTTYRSVIYTF 147          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_MYCGE (Peptide methionine sulfoxide reductase msrA OS=Mycoplasma genitalium GN=msrA PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.651e-26
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYF 627
            FG GCFWG+E  FQ + GV KT VGY    + NPSYE VCSG TN  E V+V+Y+ KE S   L++  +   DPT+ NRQGND+GTQYR+GIY+
Sbjct:    6 FGGGCFWGIEKYFQLIKGVKKTSVGYLNSRIRNPSYEQVCSGYTNAVEAVKVEYEEKEISLSELIEALFEVIDPTIRNRQGNDIGTQYRTGIYW 99          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_HALWD (Peptide methionine sulfoxide reductase msrA OS=Haloquadratum walsbyi (strain DSM 16790) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.651e-26
Identity = 53/98 (54.08%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  349 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            G GCFW  E A + + GV     GY+ G + NP+Y+ VCSGTT+H EVV+++YDP +  +  LL++F+A HDPT LNRQG DVGTQYRS I  +T EQ
Sbjct:    8 GGGCFWCTEAAMKELAGVNTVTSGYAGGDIDNPTYKQVCSGTTDHAEVVQIEYDPTKIEYSELLEVFFATHDPTQLNRQGPDVGTQYRSIILTHTAEQ 105          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_XYLFM (Peptide methionine sulfoxide reductase msrA OS=Xylella fastidiosa (strain M12) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 56/100 (56.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  343 QFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            QFG GCFWG E  F ++PGV  T  GY+ G +  P+Y +VCSG T H EVV V YD    SF+ LL  FW  HDPT   RQGND+GTQYRS I+  T EQ
Sbjct:   49 QFGLGCFWGAERLFWQLPGVFSTAAGYAGGGVPYPTYREVCSGETGHAEVVLVVYDHTVISFEQLLQTFWESHDPTQGMRQGNDIGTQYRSVIHCTTSEQ 148          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ERWT9 (Peptide methionine sulfoxide reductase msrA OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=msrA PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.934e-26
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            +++    GCFW  E  F+++ GV   E GY  G+  NP+Y+ VC G T H E +R+ +DP++ SF  LLD+ +A HDPT LNRQGND+GTQYRS I+  + EQ
Sbjct:    4 EYAIIAGGCFWCTEAVFKQIHGVVSVESGYIGGHTENPTYKQVCGGDTGHAEAIRIGFDPEKVSFGDLLDISFATHDPTQLNRQGNDIGTQYRSAIFPVSEEQ 106          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SULSO (Peptide methionine sulfoxide reductase msrA OS=Sulfolobus solfataricus GN=msrA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            + +  G GCFW  E  ++RV GV   + GYS G++ NP+YEDVC+ TT H EVV++ +D    S+  +L++F+  HDPT LNRQGNDVGTQYRS I ++  EQ
Sbjct:    2 EVATLGGGCFWCTEAVYKRVKGVISVKPGYSGGHVPNPTYEDVCTDTTGHAEVVQITFDSSIISYREILEIFFEIHDPTTLNRQGNDVGTQYRSIILYHNEEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_LEPBL (Peptide methionine sulfoxide reductase msrA OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  349 GAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            G GCFW +E  +Q V G+     GY+ G   NP Y  VCSGTT H E V++ +D K  S+  +L++FW  HDPT LNRQGNDVG QYRS I +++PEQ
Sbjct:    7 GGGCFWCLEAVYQMVEGIESVVSGYAAGQTKNPDYRSVCSGTTGHAETVQITFDSKVISYFEILEIFWISHDPTTLNRQGNDVGIQYRSIIPYHSPEQ 104          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBL (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  355 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYF 627
            GCFWGVE    R+ G+ +T+VGY+ G   NPSYE+VCSGTT H E   ++YD    S + LL+ FW+  DPT+LN+QGND GTQYR+GI++
Sbjct:    9 GCFWGVEEYMSRIKGIVETKVGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFY 99          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_CLOBK (Peptide methionine sulfoxide reductase msrA OS=Clostridium botulinum (strain Okra / Type B1) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.036e-25
Identity = 50/91 (54.95%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  355 GCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYF 627
            GCFWGVE    R+ G+ +T+VGY+ G   NPSYE+VCSGTT H E   ++YD    S + LL+ FW+  DPT+LN+QGND GTQYR+GI++
Sbjct:    9 GCFWGVEEYMSRIKGIVETKVGYANGIKENPSYEEVCSGTTGHAEACYIKYDESIISLEELLNKFWSIIDPTVLNKQGNDRGTQYRTGIFY 99          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_XANC8 (Peptide methionine sulfoxide reductase msrA OS=Xanthomonas campestris pv. campestris (strain 8004) GN=msrA PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.353e-25
Identity = 56/100 (56.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:  343 QFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            QFG GCFWG E  F  VPGV  T VGY+ G   N +Y +VCSG T H E V V YD +  SF+ LL  FW  HDPT   +QG+DVGTQYRS IY  T  Q
Sbjct:   49 QFGLGCFWGAERKFWNVPGVYTTAVGYAGGKTPNATYSEVCSGQTGHTEAVLVVYDAQAVSFEQLLRTFWESHDPTQGMQQGSDVGTQYRSAIYCSTQAQ 148          
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_BRUA13.561e-2656.84Peptide methionine sulfoxide reductase msrA OS=Bru... [more]
MSRA_MYCGE4.651e-2656.38Peptide methionine sulfoxide reductase msrA OS=Myc... [more]
MSRA_HALWD4.651e-2654.08Peptide methionine sulfoxide reductase msrA OS=Hal... [more]
MSRA_XYLFM7.934e-2656.00Peptide methionine sulfoxide reductase msrA OS=Xyl... [more]
MSRA_ERWT97.934e-2648.54Peptide methionine sulfoxide reductase msrA OS=Erw... [more]
MSRA_SULSO1.036e-2550.49Peptide methionine sulfoxide reductase msrA OS=Sul... [more]
MSRA_LEPBL1.036e-2552.04Peptide methionine sulfoxide reductase msrA OS=Lep... [more]
MSRA_CLOBL1.036e-2554.95Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_CLOBK1.036e-2554.95Peptide methionine sulfoxide reductase msrA OS=Clo... [more]
MSRA_XANC81.353e-2556.00Peptide methionine sulfoxide reductase msrA OS=Xan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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