CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ENTS8 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=msrA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.065e-30
Identity = 60/105 (57.14%), Postives = 69/105 (65.71%), Query Frame = 1
Query:  328 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            G + + F  GCFWGVE  F  +PGV  T  GY+ GY  NP+Y +VCSG T H E VRV YDP   S++ LL +FW  HDP    RQGNDVGTQYRS IY  TPEQ
Sbjct:   42 GMEVALFAMGCFWGVERLFWALPGVYSTAAGYTGGYTPNPTYREVCSGQTGHAEAVRVVYDPNVISYEQLLQVFWENHDPAQGMRQGNDVGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SERP5 (Peptide methionine sulfoxide reductase msrA OS=Serratia proteamaculans (strain 568) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 68/134 (50.75%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  253 RPSPDPASTEN----SAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T N     ++ Q PD      G + + F  GCFWGVE  F +  GV  T  GYS GY  NP+Y +VCSG T H EVVRV +DPK  S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQ
Sbjct:   20 RTTPMPVATLNVVTDHSMTQVPD------GLEVAIFAMGCFWGVERLFWQQQGVYSTAAGYSGGYTPNPTYREVCSGQTGHTEVVRVVFDPKIISYKQLLQVFWENHDPAQGMRQGGDVGTQYRSAIYTLTPEQ 147          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALTI (Peptide methionine sulfoxide reductase msrA OS=Salmonella typhi GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALPK (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A (strain AKU_12601) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALPC (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi C (strain RKS4594) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALPA (Peptide methionine sulfoxide reductase msrA OS=Salmonella paratyphi A GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALHS (Peptide methionine sulfoxide reductase msrA OS=Salmonella heidelberg (strain SL476) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALG2 (Peptide methionine sulfoxide reductase msrA OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALEP (Peptide methionine sulfoxide reductase msrA OS=Salmonella enteritidis PT4 (strain P125109) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_SALDC (Peptide methionine sulfoxide reductase msrA OS=Salmonella dublin (strain CT_02021853) GN=msrA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.310e-30
Identity = 65/130 (50.00%), Postives = 82/130 (63.08%), Query Frame = 1
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+ +    +VPA G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL  FW  HDPT   +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPIATLH-AVNEHSMTNVPA-GMEIAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYDPAVIRYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQ 146          
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ENTS84.065e-3057.14Peptide methionine sulfoxide reductase msrA OS=Ent... [more]
MSRA_SERP55.310e-3050.75Peptide methionine sulfoxide reductase msrA OS=Ser... [more]
MSRA_SALTI5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPK5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPC5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALPA5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALHS5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALG25.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALEP5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]
MSRA_SALDC5.310e-3050.00Peptide methionine sulfoxide reductase msrA OS=Sal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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