CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186572_ssr58 microsatellite CN186572_ssr58:58..75. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2698 contig Csv1_Contig2698:182..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ECO81 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O81 (strain ED1a) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 1 
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+      +VP  G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ECO7I (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 1 
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+      +VP  G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ECO55 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli (strain 55989 / EAEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 1 
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+      +VP  G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ECO45 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 1 
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+      +VP  G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ECO24 (Peptide methionine sulfoxide reductase msrA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 65/130 (50.00%), Postives = 81/130 (62.31%), Query Frame = 1 
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T + A+      +VP  G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP   S++ LL +FW  HDP    RQGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLH-AVNGHSMTNVP-DGMEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQ 146
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_CYAP8 (Peptide methionine sulfoxide reductase msrA OS=Cyanothece sp. (strain PCC 8801) GN=msrA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.183e-29
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:  328 GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPE 639
            G + + FG GCFWG E  F +  GV  T VGY+ G   NP+Y++VC+G T HNEVV V +DPK  S++ LL +FW  H+PT   RQGNDVGTQYRSGIY Y+P+
Sbjct:   46 GLETAMFGLGCFWGAERKFWQCEGVYTTAVGYAAGITPNPTYQEVCTGLTGHNEVVLVVFDPKIISYEELLKVFWESHNPTQGMRQGNDVGTQYRSGIYVYSPQ 149
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.635e-29
Identity = 57/99 (57.58%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FGAGCFW VE  F+RVPGV  T  GY  G+  +P+YE+VCS TT H EVV V +DP   ++D LL +FW  HDPT LNRQG D+GT YRS I++++P+Q
Sbjct:   12 FGAGCFWHVEEEFRRVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQ 110
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_YERE8 (Peptide methionine sulfoxide reductase msrA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=msrA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.442e-29
Identity = 65/130 (50.00%), Postives = 77/130 (59.23%), Query Frame = 1 
Query:  253 RPSPDPASTENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T +  +  G        G + + F  GCFWGVE  F + PGV  T  GYS GY  NP+Y +VCSG T H EVVRV +DP   S+  LL +FW  HDP    RQG DVGTQYRS IY  TPEQ
Sbjct:   19 RLTPMPVATLH--VVNGHSMTHVPEGMEVAIFAMGCFWGVERLFWQQPGVYSTAAGYSGGYTPNPTYHEVCSGRTAHAEVVRVVFDPAIISYKQLLQIFWENHDPAQGMRQGGDVGTQYRSAIYVLTPEQ 146
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_METAC (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina acetivorans GN=msrA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.442e-29
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 1 
Query:  319 PAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            P  G + + F AGCFWG+E AF++V GV  T VGYS G+   P+YE VC+  T H E VRV +DPK  S+  LLD+FW  HDPT  NRQG DVG QYRS I+++  EQ
Sbjct:   24 PGEGLEKATFAAGCFWGIEEAFRQVKGVVATAVGYSGGHFEKPTYEQVCTLDTGHAEAVRVIFDPKVVSYKNLLDVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNEEQ 131
[Close]
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ENT38 (Peptide methionine sulfoxide reductase msrA OS=Enterobacter sp. (strain 638) GN=msrA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.442e-29
Identity = 63/134 (47.01%), Postives = 79/134 (58.96%), Query Frame = 1 
Query:  253 RPSPDPAST----ENSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            R +P P +T     N ++   PD      G + + F  GCFWGVE  F ++PGV  T  GY+ GY  NP+Y +VCSG T H E VR+ YDP    ++ LL +FW  HDP    +QGND GTQYRS IY  TPEQ
Sbjct:   19 RNTPMPVATLHAVNNHSMTNVPD------GMEIALFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGETGHAEAVRIVYDPSVTRYEQLLQVFWENHDPAQGMQQGNDHGTQYRSAIYPLTPEQ 146
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_ECO811.183e-2950.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO7I1.183e-2950.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO551.183e-2950.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO451.183e-2950.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_ECO241.183e-2950.00Peptide methionine sulfoxide reductase msrA OS=Esc... [more]
MSRA_CYAP81.183e-2955.77Peptide methionine sulfoxide reductase msrA OS=Cya... [more]
MSRA_GEOSL2.635e-2957.58Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_YERE83.442e-2950.00Peptide methionine sulfoxide reductase msrA OS=Yer... [more]
MSRA_METAC3.442e-2954.63Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_ENT383.442e-2947.01Peptide methionine sulfoxide reductase msrA OS=Ent... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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