CN186572

Overview
NameCN186572
Unique NameCN186572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_PSEA8 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas aeruginosa (strain LESB58) GN=msrA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.491e-28
Identity = 65/138 (47.10%), Postives = 80/138 (57.97%), Query Frame = 1
Query:  256 PSPDPASTENSAIAQGPDDD--------VPAP-GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            P+PD A     +    P+           P P G Q   FG GCFWG E    + PGV  T VGY+ GY  NP+Y++VCSG T H+EVV V Y+P+E SF+ LL +FW  HDPT   RQG D+GTQYRS IY +   Q
Sbjct:   15 PTPDQALPGRESAMPVPEAHFVNGRPLTAPFPAGLQQVLFGMGCFWGAERRLWQQPGVWVTAVGYAGGYTPNPTYDEVCSGLTGHSEVVLVVYNPQETSFEQLLKVFWEAHDPTQGMRQGGDIGTQYRSVIYTFDAAQ 152          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_PECCP (Peptide methionine sulfoxide reductase msrA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=msrA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.491e-28
Identity = 55/99 (55.56%), Postives = 65/99 (65.66%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            F  GCFWGVE  F + PG+  T  GY  GY  NP+Y +VCSG T+H E VRV +DP   S+D LL +FW  HDP    RQG D+G+QYRS IY  TPEQ
Sbjct:   48 FAMGCFWGVERLFWQQPGIYSTAAGYIGGYTPNPTYREVCSGQTDHAEAVRVVFDPAVISYDQLLQLFWENHDPAQGMRQGGDIGSQYRSAIYTLTPEQ 146          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA1_ANASP (Peptide methionine sulfoxide reductase msrA 1 OS=Anabaena sp. (strain PCC 7120) GN=msrA1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.491e-28
Identity = 57/99 (57.58%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FGAGCFWGVE AF++V GV  T VGY  G+  NP Y DV S  T H EVV+++YDP+  S++ LL +FW  HDPT LNRQG D G QYRS I+F+  +Q
Sbjct:   17 FGAGCFWGVEAAFRKVKGVVSTSVGYMGGHFPNPCYLDVLSRITGHAEVVQIEYDPQLVSYEDLLAVFWDIHDPTTLNRQGPDKGEQYRSVIFFHNEQQ 115          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_PSE14 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=msrA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.477e-28
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            +F+ FG GCFWG E    +  GV  T VGY+ G+  NP+YE+VCSG T H EVV V Y+P++ S+ +LL +FW  H+PT   RQGND+GTQYRS IY  TP+Q
Sbjct:   50 EFAIFGLGCFWGAERRLWQQEGVVSTVVGYAGGFTPNPTYEEVCSGLTAHTEVVLVVYEPEKISYKSLLKVFWEAHNPTQGMRQGNDIGTQYRSVIYCTTPKQ 152          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_OCHA4 (Peptide methionine sulfoxide reductase msrA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=msrA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.477e-28
Identity = 65/129 (50.39%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  253 RPSPDPASTE---NSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFY 630
            R  P P ST    N    +GP  +    G +   FG GCFWG E  F +VPGV  T VGY+ G   NP+YE+ C+G T H EVV V YDPK  S D LL +FW  HDPT   RQGND+GT YRS IY +
Sbjct:   23 RAQPIPTSTTHFVNGRPLKGPWPE----GYKQVLFGMGCFWGAERLFWQVPGVYVTAVGYAGGVTPNPTYEETCTGLTGHAEVVLVVYDPKVVSLDELLTLFWEEHDPTQGMRQGNDIGTTYRSVIYTF 147          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_METS4 (Peptide methionine sulfoxide reductase msrA OS=Methylobacterium sp. (strain 4-46) GN=msrA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.477e-28
Identity = 65/134 (48.51%), Postives = 80/134 (59.70%), Query Frame = 1
Query:  253 RPSPDPASTE---NSAIAQGPDDDVPAPGQQFSQFGAGCFWGVELAFQRV-PGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            RP+P P +     N    +GP  +    G + + FG GCFWG E  F ++  G+  T VGY+ G   NP+YE+VC+G T HNEVV V YDP    F  LL  FW  HDPT   RQGNDVGTQYRSG+Y   PE+
Sbjct:   20 RPTPLPTAERHFVNGRALKGPYPE----GIETALFGLGCFWGAERKFWQLGDGIWVTAVGYAAGTTPNPTYEEVCTGLTGHNEVVLVAYDPAVLPFGQLLRTFWESHDPTQGMRQGNDVGTQYRSGLYVSDPER 149          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_PSEU2 (Peptide methionine sulfoxide reductase msrA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=msrA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.107e-27
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  334 QFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            +F+ FG GCFWG E    +  GV  T  GY+ G+  NP+YE+VCSG T H EVV V Y+P + S++ LL +FW  H+PT   RQGND+GTQYRS IY  TPEQ
Sbjct:   50 EFAIFGMGCFWGAERRLWQQEGVVSTVAGYAGGFTPNPTYEEVCSGLTGHTEVVLVVYEPAKISYEELLKVFWEVHNPTQGMRQGNDIGTQYRSVIYCTTPEQ 152          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_VIBPA (Peptide methionine sulfoxide reductase msrA OS=Vibrio parahaemolyticus GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  331 QQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            QQ    G GCFWG E  F ++ GV  T VGY+ G+  NP+YE+VC+G T H EVVRV +D +  S   LL +FW +HDPT   RQGND+GTQYRS IY Y+ +Q
Sbjct:   42 QQQILLGMGCFWGAERLFWQLDGVVSTSVGYAGGFTPNPTYEEVCTGKTGHTEVVRVVFDERVISLAQLLAVFWEKHDPTQGMRQGNDLGTQYRSAIYTYSQDQ 145          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_RAT (Peptide methionine sulfoxide reductase OS=Rattus norvegicus GN=Msra PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 62/125 (49.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:  268 PASTENSAIA-----QGPDDDVPAP-GQQFSQFGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIY 624
            P  TE+  +A      G     P P G Q + FG GCFWG E  F  + GV  T+VG++ GY  NP+Y++VCS  T H EVVRV Y P+  SF+ LL +FW  HDPT   RQGND GTQYRS +Y
Sbjct:   36 PGRTESIPVAAKHHVSGNRTVEPFPEGTQMAVFGMGCFWGAERKFWLLKGVYSTQVGFAGGYTRNPTYKEVCSEKTGHAEVVRVVYRPEHVSFEELLKVFWENHDPTQGMRQGNDCGTQYRSAVY 160          
BLAST of CN186572 vs. ExPASy Swiss-Prot
Match: MSRA_ACIC5 (Peptide methionine sulfoxide reductase msrA OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=msrA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1
Query:  346 FGAGCFWGVELAFQRVPGVTKTEVGYSQGYLHNPSYEDVCSGTTNHNEVVRVQYDPKECSFDTLLDMFWARHDPTMLNRQGNDVGTQYRSGIYFYTPEQ 642
            FGAGCFWGVE +F+++ GV     GY  G L NP+Y DVC+  T H EVV + ++P E  F+ LL+ F+  HDPT LNRQG D GTQYRS I++++PEQ
Sbjct:    6 FGAGCFWGVEASFRQLHGVQDVAAGYEGGKLDNPTYRDVCTDLTGHAEVVEIDFNPDEIRFEQLLEAFFGLHDPTQLNRQGPDWGTQYRSVIFYHSPEQ 104          
The following BLAST results are available for this feature:
BLAST of CN186572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_PSEA86.491e-2847.10Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_PECCP6.491e-2855.56Peptide methionine sulfoxide reductase msrA OS=Pec... [more]
MSRA1_ANASP6.491e-2857.58Peptide methionine sulfoxide reductase msrA 1 OS=A... [more]
MSRA_PSE148.477e-2854.37Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_OCHA48.477e-2850.39Peptide methionine sulfoxide reductase msrA OS=Och... [more]
MSRA_METS48.477e-2848.51Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_PSEU21.107e-2754.37Peptide methionine sulfoxide reductase msrA OS=Pse... [more]
MSRA_VIBPA1.446e-2753.85Peptide methionine sulfoxide reductase msrA OS=Vib... [more]
MSRA_RAT1.446e-2749.60Peptide methionine sulfoxide reductase OS=Rattus n... [more]
MSRA_ACIC51.446e-2754.55Peptide methionine sulfoxide reductase msrA OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003C01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186572 ID=CN186572; Name=CN186572; organism=Citrus sinensis; type=EST; length=644bp
AGTAACGTCTCCAAATCTTTAAAACCAGCAATGGTCTTACCCAAGTGTCT
TTCCATAACCACCACCACCACCACCGTCGCCGCTACCATCTCCAAATCAC
CACTTCTTCTAATCTCCTCTTCTCTCTCTTCACCAAAAAACCCTCTTTCT
CTCTCTAAACCCAACCCGACCCATTTCCCTCTCACTGCCCGACCTATTTC
CACCCACTACAAGCCCCCCATGAACATCCTCAACAAGCTCGGCTTCGGCT
TCAGGCCCAGCCCCGACCCCGCGTCCACGGAGAACTCCGCCATCGCTCAG
GGCCCCGACGACGACGTTCCGGCCCCCGGTCAGCAGTTTTCCCAGTTCGG
CGCTGGCTGCTTTTGGGGCGTCGAATTGGCGTTCCAGAGAGTGCCAGGTG
TCACCAAGACCGAAGTTGGGTACAGCCAAGGCTACTTGCATAACCCTAGC
TACGAGGACGTGTGTAGTGGGACTACCAATCATAATGAAGTTGTTAGGGT
TCAGTATGATCCTAAGGAGTGTAGTTTCGATACTTTGCTTGATATGTTTT
GGGCTCGCCATGATCCTACCATGCTTAATCGGCAGGGTAATGATGTTGGA
ACACAGTACAGATCTGGAATTTATTTTTACACTCCTGAGCAAGA
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