CN186568
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17 Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEY-------RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 548 +++G L RE++VE F YG I IDLK G+ FVEFE+ RDA+DA+ DG + R+ +E A + R++V L S SWQDLKD MR+AG+V F+ R G+V++ +Y D+K+AI+KL Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKL 164
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SRP2_SCHPO (Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe GN=srp2 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15 Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 551 L+VG +P ++ D F YG I +D K+ G+ FVE E+ARDA D + G +F G R+ VE A +R++V L SWQDLKD MR+AG+ F+ R+ G G+V+++ +DM++A+ L+ Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQI--LDCKLMN---GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTG---FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290 +YVG LP D +E+E++F ++G I + + RPPG+AFVE+++ RDAEDA+R DG G R RVEL+ Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11 Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290 +YVGNL + E+E F KYGP+ ++ + PPG+AFVEFE+ RDAEDA R DG G R+RVE++ Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMS 82
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290 +YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG G R+RVEL+ Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 111
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290 +YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG G R+RVEL+ Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 3 Query: 75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290 +YVGNL + E+E F YGP+ + I PPG+AFVEFE+ RDAEDA+RG DG G R+RVEL+ Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82 The following BLAST results are available for this feature:
BLAST of CN186568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186568 ID=CN186568; Name=CN186568; organism=Citrus sinensis; type=EST; length=706bpback to top |