CN186568

Overview
NameCN186568
Unique NameCN186568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS5_MOUSE (Splicing factor, arginine/serine-rich 5 OS=Mus musculus GN=Sfrs5 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 57/165 (34.55%), Postives = 82/165 (49.70%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEY-------RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKL 548
            +++G L    RE++VE  F  YG I  IDLK      G+ FVEFE+ RDA+DA+   DG +    R+ +E A                           +        R++V  L S  SWQDLKD MR+AG+V F+   R      G+V++ +Y D+K+AI+KL
Sbjct:    6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGNDRRKCSTCKNRNRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRP-KLNEGVVEFASYGDLKNAIEKL 164          
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SRP2_SCHPO (Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe GN=srp2 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELAXXXXXXXXXXXXXXXXXXXXXXXXXXXEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLD 551
            L+VG +P      ++ D F  YG I  +D K+     G+ FVE E+ARDA D +    G +F G R+ VE A                            +R++V  L    SWQDLKD MR+AG+  F+   R+  G  G+V+++  +DM++A+  L+
Sbjct:    6 LFVGRIPPQATREDMMDFFKGYGQI--LDCKLMN---GFGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPARGERRRRENFRESAASKYPRPRRTG---FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPG-AGVVEFSTEEDMRNALTSLN 155          
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: RSP6_CAEEL (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans GN=rsp-6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290
            +YVG LP D   +E+E++F ++G I  +   +  RPPG+AFVE+++ RDAEDA+R  DG    G R RVEL+
Sbjct:    5 VYVGGLPSDATSQELEEIFDRFGRIRKV--WVARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74          
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: RBP1_DROME (RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.006e-11
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290
            +YVGNL     + E+E  F KYGP+ ++   +   PPG+AFVEFE+ RDAEDA R  DG    G R+RVE++
Sbjct:   13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRIRVEMS 82          
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290
            +YVGNL     + E+E  F  YGP+  +   I   PPG+AFVEFE+ RDAEDA+RG DG    G R+RVEL+
Sbjct:   42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 111          
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290
            +YVGNL     + E+E  F  YGP+  +   I   PPG+AFVEFE+ RDAEDA+RG DG    G R+RVEL+
Sbjct:   13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82          
BLAST of CN186568 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 3
Query:   75 LYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAEDAIRGRDGYDFDGHRLRVELA 290
            +YVGNL     + E+E  F  YGP+  +   I   PPG+AFVEFE+ RDAEDA+RG DG    G R+RVEL+
Sbjct:   13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 82          
The following BLAST results are available for this feature:
BLAST of CN186568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SFRS5_MOUSE4.662e-1734.55Splicing factor, arginine/serine-rich 5 OS=Mus mus... [more]
SRP2_SCHPO9.722e-1532.08Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyc... [more]
RSP6_CAEEL1.006e-1147.22Probable splicing factor, arginine/serine-rich 6 O... [more]
RBP1_DROME1.006e-1148.61RNA-binding protein 1 OS=Drosophila melanogaster G... [more]
SFRS7_MOUSE3.823e-1151.39Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS7_HUMAN3.823e-1151.39Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN3.823e-1151.39Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186568 ID=CN186568; Name=CN186568; organism=Citrus sinensis; type=EST; length=706bp
ATTCTTAGTCTTTGTGCACAACTATCGTTTAATCATCATTACAGGAAAAA
ATGAGCAGCCGTGCAAGCAGAACTCTCTATGTTGGGAACCTGCCTGGTGA
TATTCGGGAGAGAGAAGTGGAAGATCTGTTTTACAAGTATGGACCTATAG
CCCACATTGACCTGAAGATCCCGCCAAGGCCTCCTGGTTATGCATTTGTT
GAGTTTGAAGAGGCTCGTGATGCTGAGGATGCAATTCGTGGTCGCGATGG
CTATGATTTTGATGGGCATCGGTTACGGGTGGAACTTGCGCATGGTGGGC
GGGGCCGTTCATCATCTGATCGTCATAGTAGTCACAGCAGTGGCCGAGGA
CGTGGAGTATCCAGGCGATCCGAATATCGTGTGTTAGTCACTGGATTACC
CTCTTCTGCTTCATGGCAAGACCTTAAGGATCACATGCGTCGAGCAGGAG
ATGTTTGTTTCTCACAAGTTTTTCGTGATGGCAGTGGCACAACTGGCATT
GTGGACTACACAAACTATGATGATATGAAGCATGCAATCAAAAAACTTGA
TGACTCTGAGTTTAGGAATGCATTTTCTCGGGCTTATGTTCGGGTGAGGG
AGTATGATCATAGACGTGATGGATCCCAGAGTCCTAGTCGTGGCCGATCT
TATTCAAGAGGGCGGAGTGAGAGCCGAAGCCGCAGTCGCAGTCGTGGCCG
AAGTTA
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