CN186550
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 211.46 bits (537), Expect = 4.309e-54 Identity = 98/183 (53.55%), Postives = 133/183 (72.68%), Query Frame = -3 Query: 231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779 H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++ +++ Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 1.638e-53 Identity = 99/183 (54.10%), Postives = 132/183 (72.13%), Query Frame = -3 Query: 231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779 H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E+++ E++ Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 207.994 bits (528), Expect = 4.765e-53 Identity = 98/183 (53.55%), Postives = 132/183 (72.13%), Query Frame = -3 Query: 231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779 H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT +G+P PYDK KRMV+P ALKV+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQ+ +LR +AEK E+++ E++ Sbjct: 14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 201.06 bits (510), Expect = 5.824e-51 Identity = 96/182 (52.75%), Postives = 125/182 (68.68%), Query Frame = -3 Query: 231 MLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 776 +LGRLA+++A E+L G KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT ++GVP PYDK KRMV+P ALK++RL+ K+ LLGRL+ EVGW Y LE+KRKE+A++ Y ++K + KL AEK E + ++ Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 5.451e-49 Identity = 93/174 (53.45%), Postives = 123/174 (70.69%), Query Frame = -3 Query: 261 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 779 H+LGRLAS++AK+LLNGQK+VVVRCE + ISG R K+KY +LRK P+ G P HFRAP++I ++ +RGMIPHKT +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRLSSEVGW Y D + LE++RK + YER+K A+ +A+K+A+ Sbjct: 15 HLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.214e-48 Identity = 92/188 (48.94%), Postives = 127/188 (67.55%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 H+LGRLASV+AK LL G KV VVRCEE+ +SG R K+K++ +LRKR N P+ GP HFRAP++I ++ +RGMIPHKT ++G+P+PYDK +R+V+P A++VL L+ KYC +GRLS EVGW+Y D IK LE+KRK + +V + ++L KL VKA + + P +II Y Sbjct: 16 HLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 2.072e-48 Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERA--QVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 H+LGRLA+V+AK LL G KVVVVRCE++ ISG R K+K+M FLRKR N P+ GP HFRAP+KILW+T+RGMIPHKT +Y+G P PYD +R+V+P AL+V L+ G KYC +GRLS EVGW Y + +++LE KRK +A +VAYER+ L K+ A + P +I Y Sbjct: 16 HLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERK--LKKITKDAGAKVSKATAPFTAVIQSYGY 203
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.615e-48 Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 H+LGRLA+V+AK LL G KVVVVRCE+I ISG R K+K+M FLRKR N P+ GP HFRAP+KILW+T+RGMIPHKT AY+G P PYD +R+V+P AL+V L+ G KYC +GRLS EVGW Y D +++LE KRK ++ K+L ++ ++ + + P +I Y Sbjct: 16 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVAKTTAPFTAVIQSYGY 203
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 1.028e-47 Identity = 95/188 (50.53%), Postives = 125/188 (66.49%), Query Frame = -3 Query: 216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779 H+LGRLAS++AK+LL G KVVV+R EEI ISG R K+KYM FLRKR N P+ G H+RAP KI WRT+RGM+PHKT AYEGVPA Y KTK + P A + RLQ K+C++GRLS EVGW + D + +LE KRK + +E++K++ KL V+A+K A ++ +II + Y Sbjct: 15 HLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.368e-46 Identity = 92/181 (50.83%), Postives = 122/181 (67.40%), Query Frame = -3 Query: 237 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLE 779 H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK PS G HFRAP++I + +RGM+PHKT A EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++ Y+ + K ++ + KAA G E Sbjct: 15 HLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQK-KIASAKAASSVNGKLAE 194 The following BLAST results are available for this feature:
BLAST of CN186550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186550 ID=CN186550; Name=CN186550; organism=Citrus sinensis; type=EST; length=781bpback to top |