CN186550

Overview
NameCN186550
Unique NameCN186550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 211.46 bits (537), Expect = 4.309e-54
Identity = 98/183 (53.55%), Postives = 133/183 (72.68%), Query Frame = -3
Query:  231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779
            H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    +++
Sbjct:   14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTQVL 196          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.638e-53
Identity = 99/183 (54.10%), Postives = 132/183 (72.13%), Query Frame = -3
Query:  231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779
            H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQL +LR +AEK  E+++    E++
Sbjct:   14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVEKKICKFTEVL 196          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 207.994 bits (528), Expect = 4.765e-53
Identity = 98/183 (53.55%), Postives = 132/183 (72.13%), Query Frame = -3
Query:  231 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 779
            H+LGRLA+++AK++L G+KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT             +G+P PYDK KRMV+P ALKV+RL+   K+  LGRL+ EVGW Y      LE+KRKE+A++ Y ++KQ+ +LR +AEK  E+++    E++
Sbjct:   14 HLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVL 196          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.824e-51
Identity = 96/182 (52.75%), Postives = 125/182 (68.68%), Query Frame = -3
Query:  231 MLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEII 776
            +LGRLA+++A E+L G KVVVVRCE I ISG   R K+KY+ FLRKRMNT PS GP HFRAP++I WRT+RGM+PHKT            ++GVP PYDK KRMV+P ALK++RL+   K+ LLGRL+ EVGW Y      LE+KRKE+A++ Y ++K + KL   AEK  E  +     ++
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVL 182          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.451e-49
Identity = 93/174 (53.45%), Postives = 123/174 (70.69%), Query Frame = -3
Query:  261 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 779
            H+LGRLAS++AK+LLNGQK+VVVRCE + ISG   R K+KY  +LRK     P+ G P HFRAP++I ++ +RGMIPHKT            +EGVP PYDK K+MV+P AL+VLRLQ G K+C +GRLSSEVGW Y D +  LE++RK +    YER+K  A+   +A+K+A+
Sbjct:   15 HLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_DROME (60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.214e-48
Identity = 92/188 (48.94%), Postives = 127/188 (67.55%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            H+LGRLASV+AK LL G KV VVRCEE+ +SG   R K+K++ +LRKR N  P+ GP HFRAP++I ++ +RGMIPHKT            ++G+P+PYDK +R+V+P A++VL L+   KYC +GRLS EVGW+Y D IK LE+KRK + +V  +  ++L KL VKA +   +   P  +II    Y
Sbjct:   16 HLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVVVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTVKARENIAKAAEPFNKIIKSYGY 203          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_CHOPR (60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.072e-48
Identity = 97/190 (51.05%), Postives = 126/190 (66.32%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERA--QVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            H+LGRLA+V+AK LL G KVVVVRCE++ ISG   R K+K+M FLRKR N  P+ GP HFRAP+KILW+T+RGMIPHKT           +Y+G P PYD  +R+V+P AL+V  L+ G KYC +GRLS EVGW Y + +++LE KRK +A  +VAYER+  L K+   A     +   P   +I    Y
Sbjct:   16 HLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYERK--LKKITKDAGAKVSKATAPFTAVIQSYGY 203          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_SPOFR (60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.615e-48
Identity = 93/188 (49.47%), Postives = 123/188 (65.43%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            H+LGRLA+V+AK LL G KVVVVRCE+I ISG   R K+K+M FLRKR N  P+ GP HFRAP+KILW+T+RGMIPHKT           AY+G P PYD  +R+V+P AL+V  L+ G KYC +GRLS EVGW Y D +++LE KRK ++       K+L ++  ++ +   +   P   +I    Y
Sbjct:   16 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVVVPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYEKKLKRITKESGEKVAKTTAPFTAVIQSYGY 203          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.028e-47
Identity = 95/188 (50.53%), Postives = 125/188 (66.49%), Query Frame = -3
Query:  216 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLEIIAPIKY 779
            H+LGRLAS++AK+LL G KVVV+R EEI ISG   R K+KYM FLRKR N  P+ G  H+RAP KI WRT+RGM+PHKT           AYEGVPA Y KTK +  P A +  RLQ   K+C++GRLS EVGW + D + +LE KRK +    +E++K++ KL V+A+K A  ++    +II  + Y
Sbjct:   15 HLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQAKKNAAPKIAQYQKIIEALGY 201          
BLAST of CN186550 vs. ExPASy Swiss-Prot
Match: RL16A_SCHPO (60S ribosomal protein L16-A OS=Schizosaccharomyces pombe GN=rpl16a PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.368e-46
Identity = 92/181 (50.83%), Postives = 122/181 (67.40%), Query Frame = -3
Query:  237 HMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTXXXXXXXXXXXAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLGPQLE 779
            H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG   R K+KY+ +LRK     PS G  HFRAP++I  + +RGM+PHKT           A EG+P P+DK KR+V+P AL+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++   Y+ +    K ++ + KAA    G   E
Sbjct:   15 HLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAKLAKQK-KIASAKAASSVNGKLAE 194          
The following BLAST results are available for this feature:
BLAST of CN186550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RL13A_MACFA4.309e-5453.5560S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_RAT1.638e-5354.1060S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE4.765e-5353.5560S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL13A_SALTR5.824e-5152.7560S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL16_NEUCR5.451e-4953.4560S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_DROME1.214e-4848.9460S ribosomal protein L13a OS=Drosophila melanogas... [more]
RL13A_CHOPR2.072e-4851.0560S ribosomal protein L13a OS=Choristoneura parall... [more]
RL13A_SPOFR4.615e-4849.4760S ribosomal protein L13a OS=Spodoptera frugiperd... [more]
RL13A_CAEEL1.028e-4750.5360S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL16A_SCHPO7.368e-4650.8360S ribosomal protein L16-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186550 ID=CN186550; Name=CN186550; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTTGTGACGAAATTGAGCAAATTGATAACCAAAATA
ACCCTTTTCAACAAGTATGTTGCATACAGCATAACATCTACTTCAAAACT
ACCACAGTTAAACTATAATCCATCAATATCAAAATGGAAGACAAAATATA
ATGGGAACAAACTCTTCTCAGATGTAACATTTGGAAAACAAACTCTTTAC
GAATCATCATCATCAATACTTGATGGGAGCAATGATTTCTAGCTGGGGAC
CAAGCCTCTCCTCGGCAGCCTTCTCAGCTTTGACCCTCAATTTAGCCAAC
TGCTTCCTCCTCTCATAAGCTACCTGGGCCCTCTCCTTTCTCTTCTTCTC
GAGCTCCTTAATGGTATCATAATAGTTCCATCCTACTTCAGATGAAAGCC
TGCCCAACAAGCAGTACTTGTGTCCTTTTTGAAGCCTCAAGACCTTGAGA
GCATCAGGAATGACCATCCTCTTTGTCTTGTCATATGGAGCAGGAACTCC
TTCATAAGCCTTCAAACGAGCAAGGGCTGCAGCTCCACGCTTAGTTTTGT
GGGGAATCATCCCACGGATGGTACGCCAAAGGATCTTAGCGGGAGCTCGA
AAATGGATGGGACCATGAGAAGGCTTAGTGTTCATCCTCTTTCTCAAGAA
CCTCATGTACTTCATCTTCTGCCTAACAAGCCCACCTGAGATACAAATCT
CCTCGCACCGGACGACGACGACCTTCTGGCCGTTCAAGAGCTCCTTGGCC
AAAACGGAGGCAAGACGGCCGAGCATGTGGT
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