CN186546

Overview
NameCN186546
Unique NameCN186546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13853 contig Csv1_Contig13853:397..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 57/99 (57.58%), Postives = 74/99 (74.75%), Query Frame = -2
Query:  182 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSV-DQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA YK+ LI    G     E  +DQ ILDA EEAG+DLP SCRAG+CSTCAGKLVSG+  +Q D +FLDD+Q+ AG+++TC++YPT DC I +H+E E+
Sbjct:    1 MATYKVTLINEEEGINAILEVADDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER2_EQUTE (Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 54/94 (57.45%), Postives = 72/94 (76.60%), Query Frame = -2
Query:  182 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 463
            YK+ L  P+G+   F+ +  + ++D A E   DLP SC+AGACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct:    2 YKVTLKTPDGDI-TFDVEPGERLIDIASEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER2_EQUAR (Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.089e-23
Identity = 53/94 (56.38%), Postives = 71/94 (75.53%), Query Frame = -2
Query:  182 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 463
            YK+ L  P+G+   F+ +  + ++D   E   DLP SC+AGACSTC GK+VSG+VDQS+GSFLDD Q+E GY+LTCI+ P SD VI++HKE+EL
Sbjct:    2 YKVTLKTPDGDI-TFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDEL 93          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FERH_ANASP (Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC 7120) GN=fdxH PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 3.503e-22
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y+++LI    + +   E  E+  ILD AEE G++LP+SC +G+CS+C GK+V G VDQSD  FLDD QM  G+ L C++YP S+C I++H+E  L
Sbjct:    1 MASYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FERH_FREDI (Ferredoxin, heterocyst OS=Fremyella diplosiphon GN=fdxH PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y+++LI    + +   E  ED  IL+ A E G++LP+SC +G+CS+C GK+V G VDQSD  FLDD QM  G+ L C++YP S+C I++H+E  L
Sbjct:    1 MATYQVRLINKKEDLDSTIEIDEDTTILEGAAENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMSKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FERH_ANAVT (Ferredoxin, heterocyst OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH1 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.019e-21
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y+++LI      +   E  E+  ILD AEE G++LP+SC +G+CS+C GK+V G VDQSD  FLDD Q+  G+ L C++YP S+C I++H+E  L
Sbjct:    1 MATYQVRLISKKENIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQVGKGFALLCVTYPRSNCTIKTHQEPYL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER2_PLEBO (Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 44/98 (44.90%), Postives = 68/98 (69.39%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y+++LI      +      ED  +L+AAEEA +DLP+SC +GACS+C GK+V G ++Q D +FLD+ Q+  G++L C++YP +DC I++H+E  L
Sbjct:    1 MATYQVRLINKKRNLDITLPVDEDTTVLEAAEEAELDLPFSCHSGACSSCVGKVVEGEINQDDQTFLDEEQVAKGFVLLCVTYPRTDCTIRTHQEAYL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER2_SYNP6 (Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF2 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA Y++++I   G+   F A  DQ +LD+A+ AGVDLP SC  G C+TCA +++SG VDQ D   +     + GY L C++YP SD  I++HKE+EL
Sbjct:    1 MATYQVEVIY-QGQSQTFTADSDQSVLDSAQAAGVDLPASCLTGVCTTCAARILSGEVDQPDAMGVGPEPAKQGYTLLCVAYPRSDLKIETHKEDEL 96          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FERV_ANAVT (Ferredoxin, vegetative OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fdxH2 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 43/98 (43.88%), Postives = 66/98 (67.35%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGE-EHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            M  Y+++LI      +      E+  ILDAAE+  ++LP+SC++G+CS+C  K+V G VDQS+  FLD+ QM  G+++ C+SYP SDC I++H+E  L
Sbjct:    1 MTTYQVRLINKKRAIDITIPVDENTTILDAAEQQDIELPFSCQSGSCSSCVAKVVEGEVDQSEQVFLDEEQMAKGFIVLCVSYPRSDCTIRTHQEPYL 98          
The following BLAST results are available for this feature:
BLAST of CN186546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER2_APHSA3.999e-2657.58Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]
FER2_EQUTE3.743e-2457.45Ferredoxin-2 OS=Equisetum telmateia PE=1 SV=1[more]
FER2_EQUAR1.089e-2356.38Ferredoxin-2 OS=Equisetum arvense PE=1 SV=1[more]
FERH_ANASP3.503e-2248.98Ferredoxin, heterocyst OS=Anabaena sp. (strain PCC... [more]
FERH_FREDI4.575e-2247.96Ferredoxin, heterocyst OS=Fremyella diplosiphon GN... [more]
FERH_ANAVT1.019e-2147.96Ferredoxin, heterocyst OS=Anabaena variabilis (str... [more]
FER2_PLEBO5.058e-2144.90Ferredoxin-2 OS=Plectonema boryanum GN=fdxH PE=3 S... [more]
FER2_SYNP67.304e-2046.39Ferredoxin-2 OS=Synechococcus sp. (strain ATCC 271... [more]
FERV_ANAVT9.540e-2043.88Ferredoxin, vegetative OS=Anabaena variabilis (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186546 ID=CN186546; Name=CN186546; organism=Citrus sinensis; type=EST; length=686bp
CTTTTTTTCCCAAATGCCAGTAATAGTATAACCAAATGAAAATTTAAAGA
TCCCTTTGCACAAGACAACACACTGAAATCTAAAAAATATTGTACGTTCA
TGAGAAACCTTATCGGCATACTCAGGCACTTGATCACAGTTCATACTTGA
AAAACCCTAAATCAACCGACAGTACTCAGCAAAGCTCTTCTTCCTTGTGA
GACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGATA
ACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTCAA
CTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGCGG
CAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATGTA
CTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCGTTAGGTCCAATCA
GCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATTTC
AGGCCAAAGGTCTTGGAGATGCCCTTAACAGACCCAAGTGAGGATGGGCT
CTTGATTAAGTTCCTTGATAGTTGATTTCTGGGTGCAGCTTTAACCATGC
ACGGGGCACTAAGTGTCACAGTCGACATCTTTACCCAGAAAAGCAAGAGA
TCGAGCGGCGGAGCGCGCGAGGTGGCGAGTGGGCCT
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