CN186546

Overview
NameCN186546
Unique NameCN186546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13853 contig Csv1_Contig13853:397..1082. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = -2
Query:  182 PNFQASMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 490
            P  + S   YK+ L  P+G++   E   D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD QM  G++LTC++YPTSDC IQ+H+EE L
Sbjct:   24 PASRMSCMAYKVTLKTPSGDK-TIECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 64/98 (65.31%), Postives = 79/98 (80.61%), Query Frame = -2
Query:  182 SMAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 475
            + A Y +KLI P GE  E +  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSGSVDQSD S+LDD Q+  G++LTC +YPTSD VI++HKEEEL
Sbjct:   51 AQATYNVKLITPEGEV-ELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEEL 147          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 63/98 (64.29%), Postives = 77/98 (78.57%), Query Frame = -2
Query:  182 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            M  YK+KL     G + E     DQYILDAAEE G+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD Q++ G++LTC++YPTS+C I +H+EE L
Sbjct:    1 MTSYKVKLTNEKEGIDVEINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_PORPU (Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = -2
Query:  182 MAVYKIKLIGPN-GEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA YKI L+  + G +  F+  ED YILDAAEEAG++LPYSCRAGACSTCAGK+  GSVDQSD SFLDD Q+  GY+LTCI+YP SDC I +H E+EL
Sbjct:    1 MADYKIHLLSEDEGIDVTFDCSEDTYILDAAEEAGIELPYSCRAGACSTCAGKVTEGSVDQSDQSFLDDEQLLKGYVLTCIAYPESDCTILTHVEQEL 98          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_PANGI (Ferredoxin OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = -2
Query:  182 YKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 463
            YK+KL+ P GE+ EFE  +D YILD AEE G+DLPYSCRAG+CS+CAGK+VSG VD SD SFL+D+ M+AGY+LTC +Y  SD VI++HKEEE+
Sbjct:    4 YKVKLLTPEGEK-EFECPDDVYILDNAEEIGIDLPYSCRAGSCSSCAGKVVSGKVDNSDNSFLNDDNMDAGYVLTCHAYANSDVVIETHKEEEV 96          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = -2
Query:  182 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 469
            A Y +KLI P+GE    E  EDQYILDAAE+AG+DLPYSCRAGACS+C G +  G+VDQSD SFLDD+QM  G+ LTC +YPTS+C I++HKE++L
Sbjct:    1 ATYSVKLINPDGEV-TIECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_APHSA (Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.392e-31
Identity = 62/97 (63.92%), Postives = 77/97 (79.38%), Query Frame = -2
Query:  182 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 472
            MA YK+ L  P+G+ +     +D+YILD AEE G+DLPYSCRAGACSTCAGKLVSG     D SFLDD+Q++AGY+LTC++YPT DCVI++HKEE L
Sbjct:    1 MASYKVTLKTPDGD-NVITVPDDEYILDVAEEEGLDLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEEAL 96          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_TOBAC (Ferredoxin OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 62/96 (64.58%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  182 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 469
            A YK+KLI P G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG+FLDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPEGAV-EFDCPDDVYILDQAEEMGHDLPYSCRAGSCSSCAGKVTAGNVDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  182 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 469
            A YK+KL+ P+G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
BLAST of CN186546 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 60/96 (62.50%), Postives = 79/96 (82.29%), Query Frame = -2
Query:  182 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 469
            A YK+KL+ P+G   EF+  +D YILD AEE G DLPYSCRAG+CS+CAGK+ +G+VDQSDG++LDD+QM  G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ATYKVKLVTPDGPV-EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CN186546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_CHLRE4.128e-3162.14Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER1_MAIZE4.128e-3165.31Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER1_CYACA4.128e-3164.29Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_PORPU5.392e-3166.33Ferredoxin OS=Porphyra purpurea GN=petF PE=3 SV=2[more]
FER_PANGI5.392e-3165.96Ferredoxin OS=Panax ginseng PE=1 SV=1[more]
FER_EUGVI5.392e-3164.58Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_APHSA5.392e-3163.92Ferredoxin-1 OS=Aphanothece sacrum PE=1 SV=2[more]
FER_TOBAC9.197e-3164.58Ferredoxin OS=Nicotiana tabacum PE=1 SV=1[more]
FER_DATME9.197e-3162.50Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN9.197e-3162.50Ferredoxin OS=Datura inoxia PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186546 ID=CN186546; Name=CN186546; organism=Citrus sinensis; type=EST; length=686bp
CTTTTTTTCCCAAATGCCAGTAATAGTATAACCAAATGAAAATTTAAAGA
TCCCTTTGCACAAGACAACACACTGAAATCTAAAAAATATTGTACGTTCA
TGAGAAACCTTATCGGCATACTCAGGCACTTGATCACAGTTCATACTTGA
AAAACCCTAAATCAACCGACAGTACTCAGCAAAGCTCTTCTTCCTTGTGA
GACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGATA
ACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTCAA
CTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGCGG
CAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATGTA
CTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCGTTAGGTCCAATCA
GCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATTTC
AGGCCAAAGGTCTTGGAGATGCCCTTAACAGACCCAAGTGAGGATGGGCT
CTTGATTAAGTTCCTTGATAGTTGATTTCTGGGTGCAGCTTTAACCATGC
ACGGGGCACTAAGTGTCACAGTCGACATCTTTACCCAGAAAAGCAAGAGA
TCGAGCGGCGGAGCGCGCGAGGTGGCGAGTGGGCCT
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