CN186544

Overview
NameCN186544
Unique NameCN186544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:288..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = -1
Query:  515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757
            SS+ EYLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L +
Sbjct:   92 SSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRR 172          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22
Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = -1
Query:  521 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 757
            SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ L
Sbjct:   89 SSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRAL 167          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.045e-21
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = -1
Query:  515 ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 763
            ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK L +
Sbjct:   89 ELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKR 171          

HSP 2 Score: 26.1794 bits (56), Expect = 8.045e-21
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = -3
Query:  330 LNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 440
            L+ S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  182 LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.045e-21
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = -1
Query:  515 ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 763
            ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK L +
Sbjct:   89 ELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKR 171          

HSP 2 Score: 26.1794 bits (56), Expect = 8.045e-21
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = -3
Query:  330 LNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 440
            L+ S +D G     ++   +   HA+ C+P+L IGYQ
Sbjct:  182 LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 5.054e-20
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = -1
Query:  521 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 748
            QE  +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK L
Sbjct:   93 QEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQL 168          

HSP 2 Score: 36.5798 bits (83), Expect = 5.054e-20
Identity = 21/50 (42.00%), Postives = 27/50 (54.00%), Query Frame = -3
Query:  267 AQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 398
            AQP  D     ++CEPTLQIGY      + A+P S    G   NN++ GW
Sbjct:  203 AQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -1
Query:  515 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 748
            QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L K
Sbjct:   90 QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRK 167          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -1
Query:  515 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 748
            QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L K
Sbjct:   90 QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRK 167          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.134e-19
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  515 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 748
            Q+YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L +
Sbjct:   93 QDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRR 170          

HSP 2 Score: 25.409 bits (54), Expect = 4.134e-19
Identity = 13/64 (20.31%), Postives = 29/64 (45.31%), Query Frame = -3
Query:  264 VNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWL 455
            +++ Q NP  ++ G+  KP Q         +  + +    + PA+  +  T   ++N +  GW+
Sbjct:  202 MSSYQSNPPIQEAGF-FKPLQGN-------VALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = -1
Query:  515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757
            ++ QEY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ L +
Sbjct:   90 NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKR 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L K
Sbjct:   94 EYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK 170          
The following BLAST results are available for this feature:
BLAST of CN186544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
MADS8_ORYSJ4.583e-2470.37MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA7.316e-2265.82MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ8.045e-2159.04MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI8.045e-2159.04MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MAD17_ORYSJ5.054e-2052.63MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MADS1_ORYSJ3.399e-1961.54MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI3.399e-1961.54MADS-box transcription factor 1 OS=Oryza sativa su... [more]
AGL3_ARATH4.134e-1957.69Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MAD34_ORYSJ8.371e-1855.56MADS-box transcription factor 34 OS=Oryza sativa s... [more]
MAD14_ORYSJ3.517e-1654.55MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186544 ID=CN186544; Name=CN186544; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTTTTTCAACAAGGCGTTTGTTAAATAAAGACCTTTGAG
GTGATTGAAAATACACGCACACACAACATAGCTCCCTTTCGTCATCAGTT
TCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGAT
TGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTT
GCTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGC
TCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCT
GCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGT
GGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTG
GTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTG
TTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAAATCGGCGTGCCT
TAGCGTCATCGTCCTTTGTTGAGGGTCTTATTTGCTTCGCTCAGCAACTG
TTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTG
TTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCA
AGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTG
GGATCTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAGATATTCTTGCT
GGCTACTTAACTCCAGGGCCTC
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