CN186544
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.583e-24 Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = -1 Query: 515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757 SS+ EYLKLKAR E LQR+QRNLLGE+LG L KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L + Sbjct: 92 SSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRR 172
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 7.316e-22 Identity = 52/79 (65.82%), Postives = 65/79 (82.28%), Query Frame = -1 Query: 521 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 757 SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ L Sbjct: 89 SSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRAL 167
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.045e-21 Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = -1 Query: 515 ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 763 ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK L + Sbjct: 89 ELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKR 171 HSP 2 Score: 26.1794 bits (56), Expect = 8.045e-21 Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = -3 Query: 330 LNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 440 L+ S +D G ++ + HA+ C+P+L IGYQ Sbjct: 182 LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 8.045e-21 Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = -1 Query: 515 ELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 763 ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL IRS++ Q +LD + EL+ KEQ L +ANK L + Sbjct: 89 ELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKR 171 HSP 2 Score: 26.1794 bits (56), Expect = 8.045e-21 Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = -3 Query: 330 LNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQ 440 L+ S +D G ++ + HA+ C+P+L IGYQ Sbjct: 182 LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIGYQ 217
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 5.054e-20 Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = -1 Query: 521 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 748 QE +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R +TQ M++ + +L+ KE+ L E NK L Sbjct: 93 QEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQL 168 HSP 2 Score: 36.5798 bits (83), Expect = 5.054e-20 Identity = 21/50 (42.00%), Postives = 27/50 (54.00%), Query Frame = -3 Query: 267 AQPQGDTFFHALECEPTLQIGY------QPADPISVVTAGPSLNNYMQGW 398 AQP D ++CEPTLQIGY + A+P S G NN++ GW Sbjct: 203 AQPPPD-----IDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGW 247
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19 Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -1 Query: 515 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 748 QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L K Sbjct: 90 QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRK 167
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 3.399e-19 Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = -1 Query: 515 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 748 QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L K Sbjct: 90 QEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRK 167
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 4.134e-19 Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = -1 Query: 515 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 748 Q+YLKLK+R E LQ SQR+LLGEEL ++ ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L + Sbjct: 93 QDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRR 170 HSP 2 Score: 25.409 bits (54), Expect = 4.134e-19 Identity = 13/64 (20.31%), Postives = 29/64 (45.31%), Query Frame = -3 Query: 264 VNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWL 455 +++ Q NP ++ G+ KP Q + + + + PA+ + T ++N + GW+ Sbjct: 202 MSSYQSNPPIQEAGF-FKPLQGN-------VALQMSSHYNHNPANATNSATTSQNVNGFFPGWM 257
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2) HSP 1 Score: 90.8929 bits (224), Expect = 8.371e-18 Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = -1 Query: 515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757 ++ QEY+ LKA E LQ+SQRNLLGE+L PL + ELE LE Q+ +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ L + Sbjct: 90 NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKR 170
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2) HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16 Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -1 Query: 515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745 EY KLKA+ E +Q+ Q++L+GE+L LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L K Sbjct: 94 EYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK 170 The following BLAST results are available for this feature:
BLAST of CN186544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186544 ID=CN186544; Name=CN186544; organism=Citrus sinensis; type=EST; length=772bpback to top |