CN186544

Overview
NameCN186544
Unique NameCN186544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.517e-16
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L K
Sbjct:   94 EYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = -1
Query:  521 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 745
            E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ L
Sbjct:   92 EMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQL 166          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY +LKA+ E L+R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N  L+K
Sbjct:   94 EYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY KLKA+ E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L K
Sbjct:   94 EYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY +LKA+ E L+R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N  L K
Sbjct:   96 EYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTK 172          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.333e-14
Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY +LKA+ E L+R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N  L+K
Sbjct:   94 EYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.251e-13
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = -1
Query:  521 QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 748
            QE  KLK++YE+L R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK L
Sbjct:   91 QEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQL 166          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.634e-13
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            E+ KLKAR E LQR+Q++ +GE+L  LN KEL++LE QLD +LK IRS + Q M ++++ LQ +++ L E N  L+K
Sbjct:   94 EHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L K
Sbjct:   94 EYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.134e-13
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L K
Sbjct:   94 EYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170          
The following BLAST results are available for this feature:
BLAST of CN186544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
MAD14_ORYSI3.517e-1654.55MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MADS6_ORYSJ5.999e-1654.67MADS-box transcription factor 6 OS=Oryza sativa su... [more]
AP1_SINAL3.888e-1551.95Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
MAD15_ORYSJ3.292e-1450.65MADS-box transcription factor 15 OS=Oryza sativa s... [more]
CAL_ARATH7.333e-1449.35Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
AP1_ARATH7.333e-1448.05Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
AGL6_ARATH1.251e-1348.68Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AGL8_SOLTU1.634e-1349.35Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD18_ORYSJ2.134e-1350.65MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.134e-1350.65MADS-box transcription factor 18 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186544 ID=CN186544; Name=CN186544; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTTTTTCAACAAGGCGTTTGTTAAATAAAGACCTTTGAG
GTGATTGAAAATACACGCACACACAACATAGCTCCCTTTCGTCATCAGTT
TCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGAT
TGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTT
GCTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGC
TCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCT
GCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGT
GGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTG
GTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTG
TTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAAATCGGCGTGCCT
TAGCGTCATCGTCCTTTGTTGAGGGTCTTATTTGCTTCGCTCAGCAACTG
TTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTG
TTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCA
AGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTG
GGATCTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAGATATTCTTGCT
GGCTACTTAACTCCAGGGCCTC
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