CN186544

Overview
NameCN186544
Unique NameCN186544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.787e-13
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            E+ KLKAR E LQR+Q++ +GE+L  L+ KEL++LE QLD +LK IRS + Q M ++++ LQ K++ L E N  L+K
Sbjct:   94 EHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 36/77 (46.75%), Postives = 56/77 (72.73%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L K
Sbjct:   94 EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N  L K
Sbjct:   94 EHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLK 170          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.255e-12
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = -1
Query:  521 QQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 751
            +QE  KLK +YE+L R+ RNL+GE+L  ++ KEL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  L
Sbjct:   89 RQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKL 165          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  515 EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 745
            E  KLKAR E LQR+++  +GE+L  LN KEL++LE QL  +LK IRS + Q M ++++ LQ +++ L E N  L+K
Sbjct:   94 ENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSK 170          
The following BLAST results are available for this feature:
BLAST of CN186544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
AGL8_SOLLC2.787e-1349.35Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH3.639e-1346.75Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL1.806e-1245.45Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL13_ARATH5.255e-1245.45Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLCO2.608e-1146.75Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186544 ID=CN186544; Name=CN186544; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTTTTTCAACAAGGCGTTTGTTAAATAAAGACCTTTGAG
GTGATTGAAAATACACGCACACACAACATAGCTCCCTTTCGTCATCAGTT
TCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGAT
TGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTT
GCTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGC
TCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCT
GCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGT
GGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTG
GTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTG
TTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAAATCGGCGTGCCT
TAGCGTCATCGTCCTTTGTTGAGGGTCTTATTTGCTTCGCTCAGCAACTG
TTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTG
TTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCA
AGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTG
GGATCTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAGATATTCTTGCT
GGCTACTTAACTCCAGGGCCTC
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