CN186542

Overview
NameCN186542
Unique NameCN186542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_THEON (30S ribosomal protein S3P OS=Thermococcus onnurineus (strain NA1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.949e-31
Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIKEGVREMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGVHFRRAAYAAIRAIMRNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVSIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_THEGJ (30S ribosomal protein S3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.797e-31
Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIKEGVKEMLIDEYLEKELRRAGYGGIDIKKTPLGTKVIIFAASPGYVIGRGGRRIRELTRILERQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_THESM (30S ribosomal protein S3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 69/182 (37.91%), Postives = 107/182 (58.79%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ +G+    ++E L +EL   GY G++++ TP+ T+++I   R   V+G  GR+IRELT ++++RF      +E+  E++ N    A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GVLG+KV IM
Sbjct:    4 ERYFIKEGIKEMLIDEYLEKELRRAGYGGLDIKKTPLGTKVVIFVERPGFVIGRGGRKIRELTRILERRFNLENPQIEV--EEIKNSYFNAKVQATRLAQALERGVHFRRAAYAAIRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYIAKVGNPAETLVSRGYAQALLKLGVLGVKVSIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRFU (30S ribosomal protein S3P OS=Pyrococcus furiosus GN=rps3p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 72/182 (39.56%), Postives = 107/182 (58.79%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  LR IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRKO (30S ribosomal protein S3P OS=Pyrococcus kodakaraensis GN=rps3p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.726e-30
Identity = 70/182 (38.46%), Postives = 106/182 (58.24%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ +GV    ++E L +EL   GY G++++ TP+ T++ I A     V+G  GRRIRELT +++K+F      +E+  E++ N  L A  QA  L   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +        L+ GV+G+KV IM
Sbjct:    4 ERYFIKEGVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVTIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYSAIRAIMRNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSRGYAQAQLKLGVIGVKVSIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRAB (30S ribosomal protein S3P OS=Pyrococcus abyssi GN=rps3p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.830e-29
Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRHO (30S ribosomal protein S3P OS=Pyrococcus horikoshii GN=rps3p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.827e-29
Identity = 67/182 (36.81%), Postives = 107/182 (58.79%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +R F+ + V    ++E L +EL   GY G++++ TP+ T++II A     V+G  GRRIRELT +++++F      +++  +++ N  L A  QA  +   L  G+  RRA Y  +R IM +GA+G E+ +SGKL  +RAKS++F  GY+   G P    +       LL+ GV+G+KV IM
Sbjct:    4 ERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIM 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METBF (30S ribosomal protein S3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps3p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.518e-27
Identity = 68/182 (37.36%), Postives = 103/182 (56.59%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            +RKFV DG   A ++E    +L   GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  R+      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV+E +D      + + G LG KV+I+
Sbjct:    4 ERKFVNDGFVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVAARYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVDEVVDEGFAVAIKKLGTLGCKVRII 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METAC (30S ribosomal protein S3P OS=Methanosarcina acetivorans GN=rps3p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 66/182 (36.26%), Postives = 103/182 (56.59%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            ++KFV DG   A ++E    +L+  GY G+E+  TPM T+I+I + +   V+G+ G+ IR+LT  V  ++      ++  A++V    L A   A  L   +  G   R+A +  LR +M +GA GCEV++SGKL   R++  KF DGY+  SG PV E +D      + + G LG KV+I+
Sbjct:    4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRII 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_HALMA (30S ribosomal protein S3P OS=Haloarcula marismortui GN=rps3p PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 61/185 (32.97%), Postives = 113/185 (61.08%), Query Frame = 3
Query:   96 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            ++ +++F+ DG+   +++E    EL   GY G++V  TPM T+I+++A +   V+G+ G+ IR++T+ ++ RF   +  V++  ++V+   L A   A+ L   L  G   R+A +  +  IMESGA G E+++SGK+   R++  KF  GY+  +G+P  E +DS V   +++ G +G++VKI+
Sbjct:    1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKII 183          
The following BLAST results are available for this feature:
BLAST of CN186542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS3_THEON3.949e-3139.0130S ribosomal protein S3P OS=Thermococcus onnurine... [more]
RS3_THEGJ8.797e-3139.0130S ribosomal protein S3P OS=Thermococcus gammatol... [more]
RS3_THESM1.149e-3037.9130S ribosomal protein S3P OS=Thermococcus sibiricu... [more]
RS3_PYRFU1.501e-3039.5630S ribosomal protein S3P OS=Pyrococcus furiosus G... [more]
RS3_PYRKO9.726e-3038.4630S ribosomal protein S3P OS=Pyrococcus kodakaraen... [more]
RS3_PYRAB2.830e-2936.8130S ribosomal protein S3P OS=Pyrococcus abyssi GN=... [more]
RS3_PYRHO4.827e-2936.8130S ribosomal protein S3P OS=Pyrococcus horikoshii... [more]
RS3_METBF4.518e-2737.3630S ribosomal protein S3P OS=Methanosarcina barker... [more]
RS3_METAC1.315e-2636.2630S ribosomal protein S3P OS=Methanosarcina acetiv... [more]
RS3_HALMA2.929e-2632.9730S ribosomal protein S3P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186542 ID=CN186542; Name=CN186542; organism=Citrus sinensis; type=EST; length=671bp
TGCAGAGAGCCTTCTGCGCACACAAGCCACCTCATTGAGATCATCAGATC
CCTTTCTCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAG
CAAGAAAAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACG
AGGTACTGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTC
AGGGTAACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCA
GAACGTTCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGG
TGCAGAAAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAG
AAAGTCAACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCG
CTACAAGCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCT
TGAGGTTCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGT
GGAAAGTTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATA
TATGGTCTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGA
GACATGTTCTTTTGAGACAGGGTGTACTTGGTATTAAGGTCAAGATCATG
CTTAGTTGGGATCCTAATGGA
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