CN186542
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_THEPD (30S ribosomal protein S3P OS=Thermofilum pendens (strain Hrk 5) GN=rps3p PE=3 SV=2) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 65/181 (35.91%), Postives = 105/181 (58.01%), Query Frame = 3 Query: 108 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 RK ++ G+ + LNE L R+L Y + TP+ T++I+ A V+G KG I+ + V+++ F +++ +V N+ L A A + L+ G+ RRA L IM +GA+G E+++SGKL +QR ++ KF GY+ SG+P E +D A+ HVLL+ G+ G+KV+IM Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIENPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIM 184
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METMA (30S ribosomal protein S3P OS=Methanosarcina mazei GN=rps3p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 66/182 (36.26%), Postives = 102/182 (56.04%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 ++KFV DG A ++E +L GY G+E+ TPM T+III + + V+G+ G+ IR+LT V ++ ++ A++V L A A L + G R+A + +R +M +GA GCEV++SGKL R++ KF DGY+ SG PV E +D + + G LG KV+I+ Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLNRAGYGGMELNRTPMGTQIIIYSEKPGMVIGKAGKVIRKLTRDVATKYNLENPQID--AQEVKKPELNAQMMASRLAASIERGWYFRKAGHNTIRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGHPVEEVVDEGFAVAIKKLGTLGCKVRII 183
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METJA (30S ribosomal protein S3P OS=Methanocaldococcus jannaschii GN=rps3p PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.825e-26 Identity = 69/182 (37.91%), Postives = 104/182 (57.14%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 +R FV + V ++E +EL++ GYS ++R TP+ T+III A + V+G +G RIRELT + K F + +++ + V N L A A+ + L GL RR + +R +M +GAKG VI+SGKL +RA++ KF GYM G+P E +D + GV+G+ VKIM Sbjct: 3 ERTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHTAVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGVIGVTVKIM 182
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METLZ (30S ribosomal protein S3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps3p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.524e-26 Identity = 65/182 (35.71%), Postives = 107/182 (58.79%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 ++KFVADGV + + L +EL GY G+++ TP+ T++ I A + V+G+ G+ +R+LT+ + + VE+ ++V N L A AE L L G R+A V+R +M+SGA GCEVI++GKL RA+ KF +GY+ SG+P ++ + + G++G++VKI+ Sbjct: 4 EKKFVADGVRKVRVEQYLNKELKRAGYGGMDIVRTPVGTQVTIFAEKPGIVIGKGGKLVRQLTTDLSTVYGIESPQVEV--QQVANPNLNAQIMAERLANALERGWYFRKAGTSVIRRVMDSGALGCEVIIAGKLTGARARVQKFVEGYIKHSGEPSESIVEKGYATAIKKLGIIGVQVKIV 183
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_NATPD (30S ribosomal protein S3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 8.521e-26 Identity = 61/185 (32.97%), Postives = 113/185 (61.08%), Query Frame = 3 Query: 96 ISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 ++ + +F+ DG+ +++E + EL+ GY G+EV TPM T+I+++A + V+G+ G+ IR++T+ +++ F + V++ ++V+ L A A+ L L G R+A + + IMESGA G E+I+SGK+ R++ KF GY+ +G+P +DS V +++ G +G++VKI+ Sbjct: 1 MADEHQFIHDGLQRTQIDEFFSEELSRAGYGGMEVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTTLEEEFGLEDPQVDV--QEVDEPDLNAQIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIILSGKVTGARSRVEKFNRGYIKHNGEPAESIVDSGVGTAVMKLGTIGVQVKII 183
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METHJ (30S ribosomal protein S3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps3p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25 Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 +RKFVADGV + L EL GY G+++ TP+ T++ I A + V+G+ G+ +R LT + + +E+ ++V+N L A AE L L G R+A LR IM+SGA GCEV++SGKL R + KF +GY+ SG PVN +D + + GV+G++V+++ Sbjct: 4 ERKFVADGVRKVRVERHLGHELKRAGYGGMDLIRTPLGTQVTIFAEKPGIVIGKGGKVVRTLTQDLATTYGVESPQIEV--QQVDNPNLNAQIMAERLASALERGWYFRKAGSSTLRRIMDSGALGCEVVISGKLTGARGRVQKFTEGYIKHSGDPVNTLVDKGYAVAIKKLGVIGVQVRLI 183
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METB6 (30S ribosomal protein S3P OS=Methanoregula boonei (strain 6A8) GN=rps3p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25 Identity = 60/182 (32.97%), Postives = 107/182 (58.79%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 +RKF+A+G A + + LT+EL G+ G+++ TP+ T++ I A + V+G+ G+ + +LT + + + +E+ ++V N A AE L L G R+A ++R +M+SGA GCEV+++GKL RA++ KF +GY+ G+P N ++ + + GV+G++VKI+ Sbjct: 4 ERKFIAEGARKARVEKYLTKELKRAGFGGMDIARTPLGTQVTIFAEKPGIVIGKGGKLVHQLTQDLAQNYGVESPQIEV--QQVQNPSFNAQIMAERLANALERGWYFRKAGSSIMRRVMDSGALGCEVVIAGKLTGARARTQKFTEGYIKHCGEPSNTIVEKGYAIAIKKLGVIGVQVKIV 183
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METMJ (30S ribosomal protein S3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps3p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25 Identity = 63/182 (34.62%), Postives = 104/182 (57.14%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 ++KF+ DGV + + LT+EL GY G+++ TP+ T++ I A + V+G+ G+++R+LT + + VE+ ++V N A AE L L G R+A +R IMESGA GCEVIV+GKL R+++ KF +GY+ G+P ++ + + G +G++VKI+ Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIESPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAGKLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIV 183
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METTH (30S ribosomal protein S3P OS=Methanobacterium thermoautotrophicum GN=rps3p PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.479e-25 Identity = 63/182 (34.62%), Postives = 104/182 (57.14%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 ++ FV +G+ ++E L +EL GY G++V+VTPM T +++ A R V+G G+ +R +T ++ +F VE+ ++V+ L A + L G+ RR Y +R IM +GA+G EV +SGK+R R+ + KF DGY+ G+P +++ V L+ GVLG+ V+IM Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM 182
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_UNCMA (30S ribosomal protein S3P OS=Uncultured methanogenic archaeon RC-I GN=rps3p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24 Identity = 64/182 (35.16%), Postives = 100/182 (54.95%), Query Frame = 3 Query: 105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650 ++KFV +G A ++E +L GY G+E+ TPM T+I ++A + ++G+ G+ IR T + RFK +++ ++V L A A L L G R+A L+ IM+SGA GCEVI++GKL R + KF GY+ G+PV E +D + G++G+KV+IM Sbjct: 4 EKKFVQEGFKKAMVDEYFLEKLERAGYGGMEINRTPMGTQITLKAEKPGMIIGKAGKSIRRYTKEMDMRFKMDNPQIDV--QEVKKPELNAQMMATRLANALERGWYFRKAGQSTLQRIMDSGAMGCEVIIAGKLTGARKRREKFIAGYIKHCGKPVEELVDVGYARAKKKLGIIGVKVRIM 183 The following BLAST results are available for this feature:
BLAST of CN186542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186542 ID=CN186542; Name=CN186542; organism=Citrus sinensis; type=EST; length=671bpback to top |