CN186542

Overview
NameCN186542
Unique NameCN186542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 55/169 (32.54%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  144 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            + E L   LA+ GY   E+  TP+ T I+I A R   ++G KG  ++E++S++  +       +++    K+    L     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RAK  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19
Identity = 57/181 (31.49%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  105 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            K+ F+   +    ++E L +E     Y+G E+  TPM T + I A R   ++G+ G+ I+ L  +++K F     + ++   +     L A   A  L   L  G   RRA +  +R IM +GA G EVIVSGK+ ++RAK  K K+G +  +G  ++  +D A+    L+ G+ G++V I
Sbjct:    5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLKMGIYGVEVVI 183          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.248e-18
Identity = 57/169 (33.73%), Postives = 92/169 (54.44%), Query Frame = 3
Query:  144 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            L+E L     + GY+G+E+  TP    ++I A     ++G  G  IR+L +++Q  F     +V +    V +  L A   A  +   L   +  RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV   LL++GV G++V I+
Sbjct:   20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIV 186          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 51/169 (30.18%), Postives = 91/169 (53.85%), Query Frame = 3
Query:  144 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            + E L  +L++ GY   E+  TP+ T I+I A R   ++G+KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 52/185 (28.11%), Postives = 97/185 (52.43%), Query Frame = 3
Query:  102 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLS 656
            K+++FV D +    ++E L +E    G+ G+E++ TP  T I +   R   V+G  G +I+E+T  ++KRF      +E+  ++VN   L     ++ +   L  G   R+A    LR +++  A G  + + GK+  +RA++ KF  G +  SG+P    ++       L+ G++G+ V+I+ S
Sbjct:    2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSVRILKS 184          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 51/169 (30.18%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  144 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 50/169 (29.59%), Postives = 88/169 (52.07%), Query Frame = 3
Query:  144 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R + E+GAKG E++VSGKL  +RA+  K   G +   G      +  AV HVLL+ G+ GI+V+I
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 50/183 (27.32%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  102 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            K+RKFV + V    + E L +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L+  +++GA+G  + +SGK+  +RA+  KF  G +  SG+P ++ +        L+ G+LG+ VKI+
Sbjct:    2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGVTVKIL 182          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 49/183 (26.78%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  102 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKIM 650
            K+RKF+ + V    + E + +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L   +++GAKG  + +SGK+  +RA+  KF  G +  SG+P ++ + +      L+ G+LG+ VKI+
Sbjct:    2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKIL 182          
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 3
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            +L E L   + + G+SGVEV   P  T+I +  TR   V+G KG  IRELT  ++K F      V++  +++    L        +   +  G A RRA    ++ IME   A G ++ +SGKLR  R+   K   G +  +G   +  +   V HV    G++GI+++I
Sbjct:   16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRI 183          
The following BLAST results are available for this feature:
BLAST of CN186542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS3_PYRCJ3.467e-1932.5430S ribosomal protein S3P OS=Pyrobaculum calidifon... [more]
RS3_METS53.467e-1931.4930S ribosomal protein S3P OS=Metallosphaera sedula... [more]
RS3_STAMF2.248e-1833.7330S ribosomal protein S3P OS=Staphylothermus marin... [more]
RS3_PYRIL8.541e-1830.1830S ribosomal protein S3P OS=Pyrobaculum islandicu... [more]
RS3_PICTO1.115e-1728.1130S ribosomal protein S3P OS=Picrophilus torridus ... [more]
RS3_PYRAE1.457e-1730.1830S ribosomal protein S3P OS=Pyrobaculum aerophilu... [more]
RS3_PYRAR3.245e-1729.5930S ribosomal protein S3P OS=Pyrobaculum arsenatic... [more]
RS3_THEVO3.967e-1527.3230S ribosomal protein S3P OS=Thermoplasma volcaniu... [more]
RS3_THEAC5.181e-1526.7830S ribosomal protein S3P OS=Thermoplasma acidophi... [more]
RS3_CENSY5.181e-1531.1830S ribosomal protein S3P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186542 ID=CN186542; Name=CN186542; organism=Citrus sinensis; type=EST; length=671bp
TGCAGAGAGCCTTCTGCGCACACAAGCCACCTCATTGAGATCATCAGATC
CCTTTCTCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAG
CAAGAAAAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACG
AGGTACTGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTC
AGGGTAACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCA
GAACGTTCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGG
TGCAGAAAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAG
AAAGTCAACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCG
CTACAAGCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCT
TGAGGTTCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGT
GGAAAGTTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATA
TATGGTCTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGA
GACATGTTCTTTTGAGACAGGGTGTACTTGGTATTAAGGTCAAGATCATG
CTTAGTTGGGATCCTAATGGA
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