CN186542

Overview
NameCN186542
Unique NameCN186542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRATT (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis GN=rpsC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R+  V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRAT1 (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=rpsC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R+  V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRATW (30S ribosomal protein S3 OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=rpsC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R   V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRATO (30S ribosomal protein S3 OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=rpsC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R   V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRATN (30S ribosomal protein S3 OS=Francisella tularensis subsp. novicida (strain U112) GN=rpsC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R   V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRATH (30S ribosomal protein S3 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rpsC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R   V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
[Close]
BLAST of CN186542 vs. ExPASy Swiss-Prot
Match: RS3_FRATF (30S ribosomal protein S3 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rpsC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 3 
Query:  141 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKL-RAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRHVLLRQGVLGIKVKI 647
            ++ E L ++LA    S +++       +I I   R   V+G+KG  + +L + V K    P   V++  E+V    + A   AES+  +L   +  RRA    ++  M+SGAKG +++VSG+L  A+ A+S   +DG +    Q     +D A    L   GV+G+KV I
Sbjct:   38 KVREFLHKKLAAAAVSKIQIERPAQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIP---VQINIEEVRKPEIDAKLVAESVAQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPL--QTFRADVDYATAEALTTYGVIGVKVWI 202
The following BLAST results are available for this feature:
BLAST of CN186542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RS3_FRATT4.539e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRAT14.539e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRATW7.743e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRATO7.743e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRATN7.743e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRATH7.743e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]
RS3_FRATF7.743e-1130.5930S ribosomal protein S3 OS=Francisella tularensis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186542 ID=CN186542; Name=CN186542; organism=Citrus sinensis; type=EST; length=671bp
TGCAGAGAGCCTTCTGCGCACACAAGCCACCTCATTGAGATCATCAGATC
CCTTTCTCTGTAATCGAATCAACAGAAAGCAAAATGGCAACTCAAATCAG
CAAGAAAAGAAAGTTCGTGGCTGATGGCGTGTTTTTCGCGGAGCTTAACG
AGGTACTGACTAGAGAGCTTGCGGAGGACGGTTATTCTGGAGTAGAGGTC
AGGGTAACTCCCATGCGTACTGAGATCATCATCCGAGCCACTCGCACTCA
GAACGTTCTTGGTGAGAAAGGGAGGAGAATTAGAGAGCTGACATCAGTGG
TGCAGAAAAGGTTCAAATTCCCGGAGAATAGCGTGGAGCTGTACGCTGAG
AAAGTCAACAATAGAGGACTATGTGCCATTGCTCAAGCCGAGTCTCTTCG
CTACAAGCTCCTTGGTGGGCTTGCTGTTCGCAGGGCTTGCTATGGTGTCT
TGAGGTTCATTATGGAAAGTGGAGCCAAGGGATGTGAGGTCATTGTCAGT
GGAAAGTTGAGGGCACAACGTGCAAAATCAATGAAGTTTAAGGATGGATA
TATGGTCTCTTCTGGTCAGCCAGTGAATGAATATATTGACTCTGCTGTGA
GACATGTTCTTTTGAGACAGGGTGTACTTGGTATTAAGGTCAAGATCATG
CTTAGTTGGGATCCTAATGGA
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